Evidence map›Paper›PMID 37014549›Full record

ArticleGenes & genomics2023

Complete mitochondrial genome of the Chinese Callipogon (Eoxenus) relictus (Cerambycidae: Prioninae) with phylogenetic analyses.

Yeon-Jae Choi, Taeyoung Jang, A-Young Kim, Jong-Seok Park, Sung-Jin Cho

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In one paragraph

Article in Genes & genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Yeon-Jae ChoiDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Taeyoung JangDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
A-Young KimDivision of Forest Biodiversity, Korea National Arboretum, Pocheon, 11186, Republic of Korea.
Jong-Seok ParkDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea. jpark16@cbnu.ac.kr.
Sung-Jin ChoDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea. sjchobio@chungbuk.ac.kr.ORCID 0000-0001-6126-6310
Chungbuk National University · KRKorea Forest Service · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe endangered longhorn beetle Callipogon (Eoxenus) relictus, which was designated as a natural monument since 1968 in Korea is still attracting public concern because of its extraordinary body size. Although mitochondrial genome data of this species was reported using Korean individual in 2017, start codon of cox1 is controversial and the secondary structures of transfer RNAs have not been illustrated.

objectiveTo report complete mitochondrial genome of Callipogon (Eoxenus) relictus from Chinese breed.

methodsWe used dissected muscle tissues from an adult of Callipogon (Eoxenus) relictus. A total of 19,276,266,645 bp from 127,657,395 reads were generated. The raw reads were assembled to mitochondrial genome data and annotated. Folded structures of transfer RNAs were drawn. Phylogenetic relationships were estimated by maximum likelihood and Bayesian inference analyses.

resultsThe mitochondrial genome of C. relictus was 15,745 bp in length and composed of 37 genes including 13 protein-coding genes (PCGs), two ribosomal RNAs, and 22 transfer RNAs. The overall base composition was 38.40% for A, 30.98% for T, 11.06% for G, and 19.56% for C. Most transfer RNAs were folded into the typical clover-leaf structure except trnS1. Phylogenetic analyses confirmed the monophyletic status of each subfamily.

conclusionMitochondrial genome composition was consistent with previous research, however, we suggest another start codon of cox1 gene and provide illustrated secondary structures of transfer RNAs. Phylogenetic analyses showed that subfamilies Cerambycinae and Prioninae are closely related.

Indexed as

ColeopteraGenome, MitochondrialAnimalsBayes TheoremCodon, InitiatorPhylogenyRNA, TransferCodon, InitiatorRNA, TransferCerambycidaeChinaKoreaMitochondrial genomeNGSPhylogenyPrioninae

Identifiers

PMID37014549
OpenAlexW4362523575

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.