Evidence map›Paper›PMID 37012370›Full record

ArticleScientific reports2023

Bioinformatics and computational chemistry approaches to explore the mechanism of the anti-depressive effect of ligustilide.

Kun Zhang, Chaoguo Zhang, Xiuli Teng, Ke Wang, Mingwei Chen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  4. Article
  5. Chemical Investigations inMolecules (Basel, Switzerland) · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Kun ZhangDepartment of Respiratory and Critical Care Medicine, First Affiliated Hospital of Xi'an Jiaotong University, 277#, Yanta West Road, Xi'an, 710061, Shaanxi, People's Republic of China.
Chaoguo ZhangDepartment of Respiratory and Critical Care Medicine, First Affiliated Hospital of Xi'an Jiaotong University, 277#, Yanta West Road, Xi'an, 710061, Shaanxi, People's Republic of China.
Xiuli TengDepartment of Respiratory and Critical Care Medicine, First Affiliated Hospital of Xi'an Jiaotong University, 277#, Yanta West Road, Xi'an, 710061, Shaanxi, People's Republic of China.
Ke WangDepartment of Respiratory and Critical Care Medicine, First Affiliated Hospital of Xi'an Jiaotong University, 277#, Yanta West Road, Xi'an, 710061, Shaanxi, People's Republic of China.
Mingwei ChenDepartment of Respiratory and Critical Care Medicine, First Affiliated Hospital of Xi'an Jiaotong University, 277#, Yanta West Road, Xi'an, 710061, Shaanxi, People's Republic of China. chenmw36@163.com.
First Affiliated Hospital of Xi'an Jiaotong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Depression affects people with multiple adverse outcomes, and the side effects of antidepressants are troubling for depression sufferers. Aromatic drugs have been widely used to relieve symptoms of depression with fewer side effects. Ligustilide (LIG) is the main component of volatile oil in angelica sinensis, exhibiting an excellent anti-depressive effect. However, the mechanisms of the anti-depressive effect of LIG remain unclear. Therefore, this study aimed to explore the mechanisms of LIG exerting an anti-depressive effect. We obtained 12,969 depression-related genes and 204 LIG targets by a network pharmacology approach, which were intersected to get 150 LIG anti-depressive targets. Then, we identified core targets by MCODE, including MAPK3, EGF, MAPK14, CCND1, IL6, CASP3, IL2, MYC, TLR4, AKT1, ESR1, TP53, HIF1A, SRC, STAT3, AR, IL1B, and CREBBP. Functional enrichment analysis of core targets showed a significant association with PI3K/AKT and MAPK signaling pathways. Molecular docking showed strong affinities of LIG with AKT1, MAPK14, and ESR1. Finally, we validated the interactions between these proteins and LIG by molecular dynamics (MD) simulations. In conclusion, this study successfully predicted that LIG exerted an anti-depressive effect through multiple targets, including AKT1, MAPK14, and ESR1, and the pathways of PI3K/AKT and MAPK. The study provides a new strategy to explore the molecular mechanisms of LIG in treating depression.

Indexed as

Drugs, Chinese HerbalMitogen-Activated Protein Kinase 144-ButyrolactoneComputational BiologyComputational ChemistryHumansMolecular Docking SimulationPhosphatidylinositol 3-KinasesProto-Oncogene Proteins c-akt4-ButyrolactoneDrugs, Chinese HerballigustilideMitogen-Activated Protein Kinase 14Phosphatidylinositol 3-KinasesProto-Oncogene Proteins c-akt

Identifiers

PMID37012370
PMCPMC10070278
OpenAlexW4362523049

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.