ArticleProceedings of the National Academy of Sciences of the United States of America2023
Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.
Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.
What it found
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
11 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Meta-analysis Driven Strain Design for Mitigating Oxidative Stresses Important in Biomanufacturing.ACS synthetic biology · 2024Pooled it
- Multi-strain analysis ofmSystems · 2026Article
- Intra-strain genetic heterogeneity in Toxoplasma gondii ME49: Oxford Nanopore long-read sequencing reveals copy number variation in the ROP8-ROP2A locus.BMC genomics · 2025Article
- Multi-strain Analysis ofbioRxiv : the preprint server for biology · 2025Article
- Article
- DiarrheagenicInternational journal of molecular sciences · 2024Article
- Clinically relevant mutations in regulatory regions of metabolic genes facilitate early adaptation to ciprofloxacin in Escherichia coli.Nucleic acids research · 2024Article
- The integrated genomic surveillance system of Andalusia (SIEGA) provides a One Health regional resource connected with the clinic.Scientific reports · 2024Article
- Article
- Strategies to increase the robustness of microbial cell factories.Advanced biotechnology · 2024Review
- Functional annotation of enzyme-encoding genes using deep learning with transformer layers.Nature communications · 2023Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
The genomic diversity across strains of a species forms the genetic basis for differences in their behavior. A large-scale assessment of sequence variation has been made possible by the growing availability of strain-specific whole-genome sequences (WGS) and with the advent of large-scale databases of laboratory-acquired mutations. We define the
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.