Evidence map›Paper›PMID 37011110›Full record

ArticlePLoS computational biology2023

Uncovering the organization of neural circuits with Generalized Phase Locking Analysis.

Shervin Safavi, Theofanis I Panagiotaropoulos, Vishal Kapoor, Juan F Ramirez-Villegas, Nikos K Logothetis, Michel Besserve

Abstract read
In one paragraph

Article in PLoS computational biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Shervin SafaviDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Theofanis I PanagiotaropoulosDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Vishal KapoorDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Juan F Ramirez-VillegasDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Nikos K LogothetisDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.
Michel BesserveDepartment of Physiology of Cognitive Processes, Max Planck Institute for Biological Cybernetics, Tübingen, Germany.ORCID 0000-0003-0025-2323

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Despite the considerable progress of in vivo neural recording techniques, inferring the biophysical mechanisms underlying large scale coordination of brain activity from neural data remains challenging. One obstacle is the difficulty to link high dimensional functional connectivity measures to mechanistic models of network activity. We address this issue by investigating spike-field coupling (SFC) measurements, which quantify the synchronization between, on the one hand, the action potentials produced by neurons, and on the other hand mesoscopic "field" signals, reflecting subthreshold activities at possibly multiple recording sites. As the number of recording sites gets large, the amount of pairwise SFC measurements becomes overwhelmingly challenging to interpret. We develop Generalized Phase Locking Analysis (GPLA) as an interpretable dimensionality reduction of this multivariate SFC. GPLA describes the dominant coupling between field activity and neural ensembles across space and frequencies. We show that GPLA features are biophysically interpretable when used in conjunction with appropriate network models, such that we can identify the influence of underlying circuit properties on these features. We demonstrate the statistical benefits and interpretability of this approach in various computational models and Utah array recordings. The results suggest that GPLA, used jointly with biophysical modeling, can help uncover the contribution of recurrent microcircuits to the spatio-temporal dynamics observed in multi-channel experimental recordings.

Indexed as

Models, NeurologicalNerve NetAction PotentialsNeurons

Identifiers

PMID37011110
PMCPMC10109521

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.