Evidence map›Paper›PMID 37008941›Full record

ArticleFrontiers in endocrinology2023

Identification of five hub immune genes and characterization of two immune subtypes of osteoarthritis.

Lifeng Pan, Feng Yang, Xianhua Cao, Hongchang Zhao, Jian Li, Jinxi Zhang, Jiandong Guo, Zhijiang Jin, Zhongning Guan, Feng Zhou

Open access · goldAbstract read
In one paragraph

Article in Frontiers in endocrinology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.7field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 7 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lifeng PanDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Feng YangCommunity Health Service Center, Hangzhou, Zhejiang, China.
Xianhua CaoDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Hongchang ZhaoDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Jian LiDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Jinxi ZhangDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Jiandong GuoDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Zhijiang JinDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Zhongning GuanDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.
Feng ZhouDepartment of Orthopaedics, Hangzhou Ninth People's Hospital, Hangzhou, Zhejiang, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Osteoarthritis (OA) is one of the most prevalent chronic diseases, leading to degeneration of joints, chronic pain, and disability in the elderly. Little is known about the role of immune-related genes (IRGs) and immune cells in OA. Method: Hub IRGs of OA were identified by differential expression analysis and filtered by three machine learning strategies, including random forest (RF), least absolute shrinkage and selection operator (LASSO), and support vector machine (SVM). A diagnostic nomogram model was then constructed by using these hub IRGs, with receiver operating characteristic (ROC) curve, decision curve analysis (DCA), and clinical impact curve analysis (CICA) estimating its performance and clinical impact. Hierarchical clustering analysis was then conducted by setting the hub IRGs as input information. Differences in immune cell infiltration and activities of immune pathways were revealed between different immune subtypes. Result: Five hub IRGs of OA were identified, including TNFSF11, SCD1, PGF, EDNRB, and IL1R1. Of them, TNFSF11 and SCD1 contributed the most to the diagnostic nomogram model with area under the curve (AUC) values of 0.904 and 0.864, respectively. Two immune subtypes were characterized. The immune over-activated subtype showed excessively activated cellular immunity with a higher proportion of activated B cells and activated CD8 T cells. The two phenotypes were also seen in two validation cohorts. Conclusion: The present study comprehensively investigated the role of immune genes and immune cells in OA. Five hub IRGs and two immune subtypes were identified. These findings will provide novel insights into the diagnosis and treatment of OA.

Indexed as

Chronic PainOsteoarthritisArea Under CurveB-LymphocytesCluster AnalysisHumansdiagnostic modelimmune microenvironmentmachine learningnomogramosteoarthritis

Identifiers

PMID37008941
PMCPMC10060864
OpenAlexW4327606264

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.