Evidence map›Paper›PMID 37006485›Full record

ArticleFrontiers in neurology2023

Transcriptome analyses of the cortex and white matter of focal cortical dysplasia type II: Insights into pathophysiology and tissue characterization.

Guilherme Rossi Assis-Mendonça, Maria Carolina Pedro Athié, João Vitor Gerdulli Tamanini, Arethusa de Souza, Gabriel Gerardini Zanetti, Patrícia Aline Oliveira Ribeiro de Aguiar Araújo, Enrico Ghizoni, Helder Tedeschi, Marina Koutsodontis Machado Alvim, Vanessa Simão de Almeida and 8 more

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Article in Frontiers in neurology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 16 citations in OpenAlex.

  1. Pooled it
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  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 2 countries.

Guilherme Rossi Assis-MendonçaDepartment of Pathology, School of Medical Sciences, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Maria Carolina Pedro AthiéThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
João Vitor Gerdulli TamaniniDepartment of Pathology, School of Medical Sciences, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Arethusa de SouzaDepartment of Pathology, School of Medical Sciences, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Gabriel Gerardini ZanettiThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Patrícia Aline Oliveira Ribeiro de Aguiar AraújoThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Enrico GhizoniThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Helder TedeschiThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Marina Koutsodontis Machado AlvimThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Vanessa Simão de AlmeidaThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Welliton de SouzaThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Roland CorasDepartment of Neuropathology, University Hospital Erlangen, Erlangen, Germany.
Clarissa Lin YasudaThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Ingmar BlümckeDepartment of Neuropathology, University Hospital Erlangen, Erlangen, Germany.
André Schwambach VieiraThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Fernando CendesThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Iscia Lopes-CendesThe Brazilian Institute of Neuroscience and Neurotechnology (BRAINN), Campinas, SP, Brazil.
Fabio RogerioDepartment of Pathology, School of Medical Sciences, University of Campinas (UNICAMP), Campinas, SP, Brazil.
Brazilian Institute of Neuroscience and Neurotechnology · BRUniversidade Estadual de Campinas (UNICAMP) · BRUniversitätsklinikum Erlangen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: Focal cortical dysplasia (FCD) is a common cause of pharmacoresistant epilepsy. According to the 2022 International League Against Epilepsy classification, FCD type II is characterized by dysmorphic neurons (IIa and IIb) and may be associated with balloon cells (IIb). We present a multicentric study to evaluate the transcriptomes of the gray and white matters of surgical FCD type II specimens. We aimed to contribute to pathophysiology and tissue characterization. Methods: We investigated FCD II (a and b) and control samples by performing RNA-sequencing followed by immunohistochemical validation employing digital analyses. Results: We found 342 and 399 transcripts differentially expressed in the gray matter of IIa and IIb lesions compared to controls, respectively. Cholesterol biosynthesis was among the main enriched cellular pathways in both IIa and IIb gray matter. Particularly, the genes Discussion: Overall, our study contributed to identifying cortical enrichment of cholesterol biosynthesis in FCD type II, which may correspond to a neuroprotective response to seizures. Moreover, specific analyses in either the gray or the white matter revealed upregulations of

Indexed as

cholesterol biosynthesis enzymesfocal cortical dysplasiaGPNMBhumanin-like 12immunohistochemistrymolecular biomarkertranscriptome

Identifiers

PMID37006485
PMCPMC10050872
OpenAlexW4324373232

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.