Evidence map›Paper›PMID 37004157›Full record

ArticleCancer medicine2023

In-depth proteomics reveals the characteristic developmental profiles of early lung adenocarcinoma with epidermal growth factor receptor mutation.

Tomoko Dai, Jun Adachi, Yuichi Dai, Noriyuki Nakano, Mariko Yamato, Shinji Kikuchi, Shingo Usui, Yuko Minami, Takeshi Tomonaga, Masayuki Noguchi and 2 more

Open access · goldAbstract read
In one paragraph

Article in Cancer medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 1 country.

Tomoko DaiTsukuba Human Tissue Biobank Center, University of Tsukuba Hospital, Ibaraki, Japan.ORCID 0000-0001-9221-840X
Jun AdachiLaboratory of Proteome for Drug Discovery Center for Drug Design Research, National Institute of Biomedical Innovation, Health and Nutrition, Osaka, Ibaraki, Japan.ORCID 0000-0003-1220-3246
Yuichi DaiDepartment of Pathology, Tsukuba Memorial Hospital, Ibaraki, Japan.
Noriyuki NakanoDepartment of Pathology, National Center for Child Health and Development, Tokyo, Japan.
Mariko YamatoDepartment of Pathology, University of Tsukuba Hospital, Ibaraki, Japan.
Shinji KikuchiDepartment of Thoracic Surgery, Faculty of Medicine, University of Tsukuba, Ibaraki, Japan.
Shingo UsuiDepartment of Respiratory Surgery and Pathology, National Hospital Organization Ibaraki Higashi National Hospital The Center of Chest Diseases and Severe Motor & Intellectual Disabilities, Ibaraki, Japan.
Yuko MinamiDepartment of Respiratory Surgery and Pathology, National Hospital Organization Ibaraki Higashi National Hospital The Center of Chest Diseases and Severe Motor & Intellectual Disabilities, Ibaraki, Japan.ORCID 0000-0002-0037-346X
Takeshi TomonagaLaboratory of Proteome for Drug Discovery Center for Drug Design Research, National Institute of Biomedical Innovation, Health and Nutrition, Osaka, Ibaraki, Japan.
Masayuki NoguchiDepartment of Pathology, Narita Tomisato Tokushukai Hospital, Chiba, Japan.
Daisuke MatsubaraTsukuba Human Tissue Biobank Center, University of Tsukuba Hospital, Ibaraki, Japan.
Noriaki SakamotoTsukuba Human Tissue Biobank Center, University of Tsukuba Hospital, Ibaraki, Japan.
University of Tsukuba · JPNational Hospital Organization · JPNational Institute of Biomedical Innovation, Health and Nutrition · JPUniversity of Tsukuba Hospital · JPNational Center For Child Health and Development · JPSuita Tokushukai Hospital · JPTsukuba Memorial Hospital · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionLung adenocarcinoma progresses stepwise from atypical adenomatous hyperplasia to adenocarcinoma in situ (AIS), followed by minimally invasive adenocarcinoma (MIA), and then obvious invasive adenocarcinoma. In this study, we examined the protein expression profiles of early and epidermal growth factor receptor (EGFR) mutation-positive lung adenocarcinomas.

methodsFifteen cases of small and EGFR mutation-positive adenocarcinomas were collected, including AIS, MIA, and small invasive adenocarcinoma (SIA). We examined their protein expression profiles by tandem mass tag (TMT)-labeling liquid chromatography-mass spectrometry (LC-MS/MS) and compared the results between AIS and MIA versus SIA. The differentially expressed proteins were then verified by Western blot analysis and immunohistochemistry (IHC). The clinicopathological implications of the proteins were also examined by IHC.

resultsA total of 4220 proteins were identified by LC-MS/MS analysis. Pathway analysis of the differentially expressed proteins revealed that pathways related to interferon α/β signaling, glutamate and glutamine metabolism, and gluconeogenesis were upregulated in SIA relative to AIS. Among the 13 differentially expressed proteins, cellular retinoic acid binding protein 2 (CRABP2), delta(24)-sterol reductase (DHCR24), and adenylate kinase 4 (AK4) were expressed significantly more strongly in SIA than in AIS. Patients with high expression of CRABP2, DHCR24, and AK4 showed a significantly poorer outcome than those with low expression.

conclusionIn comparison with AIS, SIA shows differences in several different protein expression pathways. Furthermore, CRABP2, DHCR24, and AK4 are useful IHC markers for diagnosis of lung adenocarcinoma invasiveness and may be associated with malignant progression of AIS.

Indexed as

AdenocarcinomaAdenocarcinoma in SituAdenocarcinoma of LungLung NeoplasmsChromatography, LiquidErbB ReceptorsHumansMutationProteomicsTandem Mass SpectrometryErbB Receptorsearly lung adenocarcinomaEGFR mutationinvasive lung adenocarcinomaproteomicsstepwise progression

Identifiers

PMID37004157
PMCPMC10225231
OpenAlexW4362458217

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.