Evidence map›Paper›PMID 37004154›Full record

ArticleThe FEBS journal2023

Glycosylation increases active site rigidity leading to improved enzyme stability and turnover.

Krithika Ramakrishnan, Rachel L Johnson, Samuel D Winter, Harley L Worthy, Christopher Thomas, Diana C Humer, Oliver Spadiut, Sarah H Hindson, Stephen Wells, Andrew H Barratt and 3 more

Open access · hybridAbstract read
In one paragraph

Article in The FEBS journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
13.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  3. Review
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  5. Review
  6. Article
  7. Article
  8. Comparison of two peroxidases with high potential for biotechnology applications - HRPComputational and structural biotechnology journal · 2024
    Article
  9. Review
  10. Article
  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Krithika RamakrishnanMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.
Rachel L JohnsonMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.
Samuel D WinterDepartment of Biology and Biochemistry, University of Bath, UK.
Harley L WorthyMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.ORCID 0000-0001-8497-0773
Christopher ThomasOrtho Clinical Diagnostics, Pencoed, UK.
Diana C HumerInstitute of Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, TU Wien, Austria.
Oliver SpadiutInstitute of Chemical, Environmental and Bioscience Engineering, Research Area Biochemical Engineering, TU Wien, Austria.
Sarah H HindsonDepartment of Biology and Biochemistry, University of Bath, UK.
Stephen WellsDepartment of Physics, University of Bath, UK.
Andrew H BarrattMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.
Georgina E MenziesMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.
Christopher R PudneyDepartment of Biology and Biochemistry, University of Bath, UK.ORCID 0000-0001-6211-0086
D Dafydd JonesMolecular Biosciences Division, School of Biosciences, Cardiff University, UK.ORCID 0000-0001-7709-3995
Cardiff University · GBUniversity of Bath · GBTU Wien · ATOrtho Clinical Diagnostics (United States) · USUniversity of Exeter · GB

Funding

Biotechnology and Biological Sciences Research Council BB/ M000249/1Wellcome Trust
6 · The paper itself

Abstract

Glycosylation is the most prevalent protein post-translational modification, with a quarter of glycosylated proteins having enzymatic properties. Yet, the full impact of glycosylation on the protein structure-function relationship, especially in enzymes, is still limited. Here, we show that glycosylation rigidifies the important commercial enzyme horseradish peroxidase (HRP), which in turn increases its turnover and stability. Circular dichroism spectroscopy revealed that glycosylation increased holo-HRP's thermal stability and promoted significant helical structure in the absence of haem (apo-HRP). Glycosylation also resulted in a 10-fold increase in enzymatic turnover towards o-phenylenediamine dihydrochloride when compared to its nonglycosylated form. Utilising a naturally occurring site-specific probe of active site flexibility (Trp117) in combination with red-edge excitation shift fluorescence spectroscopy, we found that glycosylation significantly rigidified the enzyme. In silico simulations confirmed that glycosylation largely decreased protein backbone flexibility, especially in regions close to the active site and the substrate access channel. Thus, our data show that glycosylation does not just have a passive effect on HRP stability but can exert long-range effects that mediate the 'native' enzyme's activity and stability through changes in inherent dynamics.

Indexed as

Protein Processing, Post-TranslationalCatalytic DomainEnzyme StabilityGlycosylationSpectrometry, FluorescenceEnzyme enhancmentEnzyme rigidityglycosylationmolecular dynamicspost-translational modification

Identifiers

PMID37004154
PMCPMC10952495
OpenAlexW4362506563

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.