Evidence map›Paper›PMID 37004071›Full record

ArticleRetrovirology2023

HIV-1 subtype C Nef-mediated SERINC5 down-regulation significantly contributes to overall Nef activity.

Delon Naicker, Nelson Sonela, Steven W Jin, Takalani Mulaudzi, Doty Ojwach, Tarylee Reddy, Mark A Brockman, Zabrina L Brumme, Thumbi Ndung'u, Jaclyn K Mann

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 5 countries.

Delon NaickerHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa.
Nelson SonelaHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa.
Steven W JinFaculty of Health Sciences, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Takalani MulaudziHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa.
Doty OjwachHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa.
Tarylee ReddyMedical Research Council, Biostatistics Unit, Durban, 4001, South Africa.
Mark A BrockmanFaculty of Health Sciences, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Zabrina L BrummeFaculty of Health Sciences, Simon Fraser University, Burnaby, BC, V5A 1S6, Canada.
Thumbi Ndung'uHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa.
Jaclyn K MannHIV Pathogenesis Programme, The Doris Duke Medical Research Institute, University of KwaZulu-Natal, Durban, 4001, South Africa. mannj@ukzn.ac.za.
University of KwaZulu-Natal · ZASimon Fraser University · CAAIDS Vancouver · CASouth African Medical Research Council · ZAUniversity College London · GB

Funding

Wellcome TrustWellcome Trust 107752/Z/15/Z
6 · The paper itself

Abstract

backgroundNef performs multiple cellular activities that enhance HIV-1 pathogenesis. The role of Nef-mediated down-regulation of the host restriction factor SERINC5 in HIV-1 pathogenesis is not well-defined. We aimed to investigate if SERINC5 down-regulation activity contributes to HIV-1 subtype C disease progression, to assess the relative contribution of this activity to overall Nef function, and to identify amino acids required for optimal activity. We measured the SERINC5 down-regulation activity of 106 subtype C Nef clones, isolated from individuals in early infection, for which the Nef activities of CD4 and HLA-I down-regulation as well as alteration of TCR signalling were previously measured. The relationship between SERINC5 down-regulation and markers of disease progression, and the relative contribution of SERINC5 down-regulation to a Nef fitness model-derived E value (a proxy for overall Nef fitness in vivo), were assessed.

resultsNo overall relationship was found between SERINC5 down-regulation and viral load set point (p = 0.28) or rate of CD4

conclusionsThese results suggest that SERINC5 down-regulation is a significant contributor to overall Nef function and identify potential genetic determinants of this Nef function that may have relevance for vaccines or therapeutics.

Indexed as

HIV-1HIV InfectionsDown-RegulationHumansMembrane Proteinsnef Gene Products, Human Immunodeficiency VirusT-LymphocytesMembrane Proteinsnef Gene Products, Human Immunodeficiency Virusnef protein, Human immunodeficiency virus 1nef protein, Human immunodeficiency virus 2SERINC5 protein, humanHIV-1 NefHIV-1 subtype CSERINC5 down-regulation

Identifiers

PMID37004071
PMCPMC10067162
OpenAlexW4362521907

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.