Evidence map›Paper›PMID 37003356›Full record

ArticleChest2023

The Fungal Microbiome of the Upper Airway Is Associated With Future Loss of Asthma Control and Exacerbation Among Children With Asthma.

Hanshu Yuan, Zhongmao Liu, Jinhong Dong, Leonard B Bacharier, Daniel Jackson, David Mauger, Homer Boushey, Mario Castro, Juliana Durack, Yvonne J Huang and 10 more

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in Chest, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT02066129 (Step-up Yellow Zone Inhaled Corticosteroids to Prevent Exacerbations), which is not on this map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT02066129 phase3completednot on this map

Step-up Yellow Zone Inhaled Corticosteroids to Prevent Exacerbations

TypeinterventionalSponsorMilton S. Hershey Medical CenterRan2014 to 2017Enrolled254ConditionsAsthmaArmsFluticasone 44 mcg, Fluticasone 220 mcg
3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Observational
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. The Microbiota in Children and Adolescents with Asthma.Children (Basel, Switzerland) · 2024
    Review
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 14 institutions in 2 countries.

Hanshu YuanDepartment of Medicine, University of Connecticut Health Center, Farmington, CT.
Zhongmao LiuDepartment of Statistics, University of Connecticut, Storrs, CT.
Jinhong DongDepartment of Medicine, University of Connecticut Health Center, Farmington, CT.
Leonard B BacharierDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN.
Daniel JacksonDepartment of Pediatrics and Medicine, University of Wisconsin School of Medicine and Public Health, Madison, WI.
David MaugerDepartment of Public Health Sciences, Penn State University, Hershey, PA.
Homer BousheyDepartment of Medicine, University of California, San Francisco, CA.
Mario CastroDivision of Pulmonary, Critical Care, and Sleep Medicine, University of Kansas School of Medicine, Kansas City, KS.
Juliana DurackSymbiome, Inc, San Francisco, CA.
Yvonne J HuangDepartment of Medicine and Department of Microbiology and Immunology, University of Michigan, Ann Arbor, MI.
Robert F LemanskeDepartment of Pediatrics and Medicine, University of Wisconsin School of Medicine and Public Health, Madison, WI.
Gregory A StorchDepartment of Pediatrics, Washington University School of Medicine, St Louis, MO.
George M WeinstockThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Kristine WylieDepartment of Pediatrics, Washington University School of Medicine, St Louis, MO.
Ronina CovarNational Jewish Health, Denver, CO.
Anne M FitzpatrickDepartment of Pediatrics, Emory University, Atlanta, GA.
Wanda PhipatanakulAsthma, Allergy and Immunology, Boston Children's Hospital, Harvard Medical School, Boston, MA.
Rachel G RobisonDepartment of Pediatrics, Vanderbilt University Medical Center, Nashville, TN.
Avraham BeigelmanDepartment of Pediatrics, Washington University School of Medicine, St Louis, MO; Kipper Institute of Allergy and Immunology, Schneider Children's Medical Center, Tel Aviv University, Tel Aviv, Israel.
Yanjiao ZhouDepartment of Medicine, University of Connecticut Health Center, Farmington, CT. Electronic address: yazhou@uchc.edu.
UConn Health · USUniversity of Wisconsin–Madison · USVanderbilt University Medical Center · USWashington University in St. Louis · USBoston Children's Hospital · USEmory University · USJackson Laboratory · USNational Jewish Health · USPennsylvania State University · USTel Aviv University · ILUniversity of California, San Francisco · USUniversity of Connecticut · USUniversity of Kansas · USUniversity of Michigan · US

Funding

Sputum Microbial Markers of Type 2-Low AsthmaR01AI129958 · NIAID · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HUANG, YVONNE JEAN · 2017 to 2021
$3.6M
NIAID NIH HHS R01 AI129958
6 · The paper itself

Abstract

backgroundAccumulating evidence suggests that the upper airway bacterial microbiota is implicated in asthma inception, severity, and exacerbation. Unlike bacterial microbiota, the role of the upper airway fungal microbiome (mycobiome) in asthma control is poorly understood. RESEARCH QUESTION: What are the upper airway fungal colonization patterns among children with asthma and their relationship with subsequent loss of asthma control and exacerbation of asthma? STUDY DESIGN AND

methodsThe study was coupled with the Step Up Yellow Zone Inhaled Corticosteroids to Prevent Exacerbations (ClinicalTrials.gov Identifier: NCT02066129) clinical trial. The upper airway mycobiome was investigated using Internal transcribed spacer 1 (ITS1) sequencing of nasal blow samples collected from children with asthma when asthma was well controlled (baseline, n = 194) and during early signs of loss of asthma control (yellow zone [YZ], n = 107).

resultsAt baseline, 499 fungal genera were detected in the upper airway samples, with two commensal fungal species, Malassezia globosa and Malassezia restricta, being most dominant. The relative abundance of Malassezia species varies by age, BMI, and race. Higher relative abundance of M globosa at baseline was associated with lower risk of future YZ episodes (P = .038) and longer time to development of first YZ episode (P = .022). Higher relative abundance of M globosa at YZ episode was associated with lower risk of progression from YZ episode to severe asthma exacerbation (P = .04). The upper airway mycobiome underwent significant changes from baseline to YZ episode, and increased fungal diversity was correlated highly with increased bacterial diversity (ρ = 0.41).

interpretationThe upper airway commensal mycobiome is associated with future asthma control. This work highlights the importance of the mycobiota in asthma control and may contribute to the development of fungi-based markers to predict asthma exacerbation.

Indexed as

AsthmaLarynxMicrobiotaMycobiomeBacteriaChildFungiHumansTracheaasthmafungiMalasseziamycobiomeupper airway

Identifiers

PMID37003356
PMCPMC10477953
OpenAlexW4361276454

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.