Evidence map›Paper›PMID 37002915›Full record

ArticleG3 (Bethesda, Md.)2023

A happy accident: a novel turfgrass reference genome.

Alyssa R Phillips, Arun S Seetharam, Patrice S Albert, Taylor AuBuchon-Elder, James A Birchler, Edward S Buckler, Lynn J Gillespie, Matthew B Hufford, Victor Llaca, Maria Cinta Romay and 3 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.3field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Genetic and genomic resources for turfgrasses: status, applications, and prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Review
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 8 institutions in 2 countries.

Alyssa R PhillipsDepartment of Evolution and Ecology and Center for Population Biology, University of California, Davis, CA 95616, USA.
Arun S SeetharamDepartment of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, IA 50011, USA.
Patrice S AlbertDivision of Biological Sciences, University of Missouri, Columbia, MO 65201, USA.
Taylor AuBuchon-ElderDonald Danforth Plant Science Center, Olivette, MO 63132, USA.
James A BirchlerDivision of Biological Sciences, University of Missouri, Columbia, MO 65201, USA.
Edward S BucklerSchool of Integrative Plant Sciences, Section of Plant Breeding and Genetics, Cornell University, Ithaca, NY 14850, USA.
Lynn J GillespieBotany Section, Research and Collections, Canadian Museum of Nature, Ottawa, ON K2P 2R1, Canada.
Matthew B HuffordDivision of Biological Sciences, University of Missouri, Columbia, MO 65201, USA.
Victor LlacaCorteva Agriscience, Johnston, IA 50131, USA.
Maria Cinta RomayInstitute for Genomic Diversity, Cornell University, Ithaca, NY 14850, USA.
Robert J SorengDeptartment of Botany, Smithsonian Institution, Washington, DC 20560, USA.
Elizabeth A KelloggDonald Danforth Plant Science Center, Olivette, MO 63132, USA.
Jeffrey Ross-IbarraDepartment of Evolution and Ecology and Center for Population Biology, University of California, Davis, CA 95616, USA.
University of Missouri · USCornell University · USDonald Danforth Plant Science Center · USUniversity of California, Davis · USCanadian Museum of Nature · CACorteva (United States) · USIowa State University · USSmithsonian Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Poa pratensis, commonly known as Kentucky bluegrass, is a popular cool-season grass species used as turf in lawns and recreation areas globally. Despite its substantial economic value, a reference genome had not previously been assembled due to the genome's relatively large size and biological complexity that includes apomixis, polyploidy, and interspecific hybridization. We report here a fortuitous de novo assembly and annotation of a P. pratensis genome. Instead of sequencing the genome of a C4 grass, we accidentally sampled and sequenced tissue from a weedy P. pratensis whose stolon was intertwined with that of the C4 grass. The draft assembly consists of 6.09 Gbp with an N50 scaffold length of 65.1 Mbp, and a total of 118 scaffolds, generated using PacBio long reads and Bionano optical map technology. We annotated 256K gene models and found 58% of the genome to be composed of transposable elements. To demonstrate the applicability of the reference genome, we evaluated population structure and estimated genetic diversity in P. pratensis collected from three North American prairies, two in Manitoba, Canada and one in Colorado, USA. Our results support previous studies that found high genetic diversity and population structure within the species. The reference genome and annotation will be an important resource for turfgrass breeding and study of bluegrasses.

Indexed as

Plant BreedingPoaBase SequenceGenomeMolecular Sequence AnnotationPlant Weedsaneuploidygenetic diversitygenome assemblyKentucky bluegrassPoaceaepolyploidypopulation structureturfgrass

Identifiers

PMID37002915
PMCPMC10234399
OpenAlexW4362453488

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.