Evidence map›Paper›PMID 37000483›Full record

ArticleJournal of the American Chemical Society2023

Predicting Structural Motifs of Glycosaminoglycans using Cryogenic Infrared Spectroscopy and Random Forest.

Jerome Riedel, Maike Lettow, Márkó Grabarics, Michael Götze, Rebecca L Miller, Geert-Jan Boons, Gerard Meijer, Gert von Helden, Gergo Peter Szekeres, Kevin Pagel

Abstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jerome RiedelDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.
Maike LettowDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.ORCID 0000-0003-4063-1977
Márkó GrabaricsDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.ORCID 0000-0002-2550-637X
Michael GötzeDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.
Rebecca L MillerDepartment of Cellular and Molecular Medicine, University of Copenhagen, Copenhagen Center for Glycomics, Copenhagen N 2200, Denmark.ORCID 0000-0001-8574-1948
Geert-Jan BoonsBijvoet Center for Biomolecular Research, Utrecht University, 3584 CG Utrecht, The Netherlands.
Gerard MeijerDepartment of Molecular Physics, Fritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.ORCID 0000-0001-9669-8340
Gert von HeldenDepartment of Molecular Physics, Fritz-Haber-Institut der Max-Planck-Gesellschaft, 14195 Berlin, Germany.ORCID 0000-0001-7611-8740
Gergo Peter SzekeresDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.ORCID 0000-0002-4597-6264
Kevin PagelDepartment of Biology, Chemistry, and Pharmacy, Freie Universität Berlin, Berlin 14195, Germany.ORCID 0000-0001-8054-4718

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In recent years, glycosaminoglycans (GAGs) have emerged into the focus of biochemical and biomedical research due to their importance in a variety of physiological processes. These molecules show great diversity, which makes their analysis highly challenging. A promising tool for identifying the structural motifs and conformation of shorter GAG chains is cryogenic gas-phase infrared (IR) spectroscopy. In this work, the cryogenic gas-phase IR spectra of mass-selected heparan sulfate (HS) di-, tetra-, and hexasaccharide ions were recorded to extract vibrational features that are characteristic to structural motifs. The data were augmented with chondroitin sulfate (CS) disaccharide spectra to assemble a training library for random forest (RF) classifiers. These were used to discriminate between GAG classes (CS or HS) and different sulfate positions (2-

Indexed as

GlycosaminoglycansRandom ForestChondroitin SulfatesHeparan SulfateSpectrophotometry, InfraredChondroitin SulfatesGlycosaminoglycansHeparan Sulfate

Identifiers

PMID37000483
PMCPMC10103134

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.