Evidence map›Paper›PMID 36999569›Full record

ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2023

Chromosome-level genome assembly of the endangered plant Tetraena mongolica.

Bingru Liu, Xiaoyu Zhao, Ziyin Wang, Huili Liu, Xueshuang Huang, Peng Yang

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. The relict plantFrontiers in plant science · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Bingru LiuKey Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of China, School of Biological Science and Engineering, North Minzu University, Yinchuan 750021, China.
Xiaoyu ZhaoKey Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of China, School of Biological Science and Engineering, North Minzu University, Yinchuan 750021, China.
Ziyin WangKey Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of China, School of Biological Science and Engineering, North Minzu University, Yinchuan 750021, China.
Huili LiuKey Laboratory of Ecological Protection of Agro-pastoral Ecotones in the Yellow River Basin, National Ethnic Affairs Commission of China, School of Biological Science and Engineering, North Minzu University, Yinchuan 750021, China.
Xueshuang HuangHunan Provincial Key Laboratory for Synthetic Biology of Traditional Chinese Medicine, School of Pharmaceutical Sciences, Hunan University of Medicine, Huaihua 418000, China.
Peng YangHunan Provincial Key Laboratory for Synthetic Biology of Traditional Chinese Medicine, School of Pharmaceutical Sciences, Hunan University of Medicine, Huaihua 418000, China.ORCID 0000-0002-6971-7558
State Ethnic Affairs Commission · CNHunan University of Traditional Chinese Medicine · CN

Funding

Ningxia Key Research and Development Program 2021BBF02009Ningxia Science and Technology Innovation Leader 2021GKLRLX12Research Start-Up Funds of North Minzu 2019KYQ001
6 · The paper itself

Abstract

Tetraena mongolica is an endangered xerophytic shrub with high ecological value for the restoration of desert vegetation because of its high tolerance to drought and heat stress. Here, we generated a high-quality chromosome-level reference genome of T. mongolica by combining PacBio HiFi data and Hi-C sequencing technologies, which was approximately 1.12 Gb (contig N50 of 25.5 Mb) in size and contained 61,888 protein-coding genes; repetitive sequences comprised 44.8% of the genome. This genome of T. mongolica is the first published genome sequence of a member of the order Zygophyllales. Genome analysis showed that T. mongolica has undergone a recent whole genome duplication event, and a recent burst of long terminal repeat insertions afterward, which may be responsible for its genome size expansion and drought adaptation. We also conducted searches for gene homologues and identified terpene synthase (TPS) gene families and candidate genes involved in triacylglycerol biosynthesis. The T. mongolica genome sequence could aid future studies aimed at functional gene identification, germplasm resource management, molecular breeding efforts, as well as evolutionary studies of Fabids and angiosperm taxa.

Indexed as

ChromosomesGenomeGenome, PlantMolecular Sequence AnnotationRepetitive Sequences, Nucleic Acidgenome assemblyPacBio HiFiTetraena mongolicaxerophytic plant

Identifiers

PMID36999569
PMCPMC10113878
OpenAlexW4361980136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.