Evidence map›Paper›PMID 36997687›Full record

ArticleNature plants2023

Low-temperature and circadian signals are integrated by the sigma factor SIG5.

Dora L Cano-Ramirez, Paige E Panter, Tokiaki Takemura, Tara Saskia de Fraine, Luíza Lane de Barros Dantas, Richard Dekeya, Thiago Barros-Galvão, Pirita Paajanen, Annalisa Bellandi, Tom Batstone and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
15.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 38 citations in OpenAlex.

  1. Genome-Wide Identification of Sigma Factors inInternational journal of molecular sciences · 2026
    Article
  2. Addressing Vitamin BCommunications biology · 2026
    Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Regreening mechanisms in cucumber: insights from a CsSIG2 mutation affecting chloroplast development.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  10. Review
  11. Circadian and environmental signal integration in a natural population ofProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Biological resilience in health and disease.Disease models & mechanisms · 2024
    Review
  16. Review
  17. Circadian regulation of metabolism across photosynthetic organisms.The Plant journal : for cell and molecular biology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 3 countries.

Dora L Cano-Ramirez *The Sainsbury Laboratory, University of Cambridge, Cambridge, UK.
Paige E Panter *John Innes Centre, Norwich, UK.
Tokiaki TakemuraLaboratory for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Tara Saskia de FraineJohn Innes Centre, Norwich, UK.
Luíza Lane de Barros DantasJohn Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0002-5342-9332
Richard DekeyaJohn Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0002-0669-650X
Thiago Barros-GalvãoJohn Innes Centre, Norwich, UK.
Pirita PaajanenJohn Innes Centre, Norwich, UK.ORCID http://orcid.org/0000-0002-0561-3717
Annalisa BellandiJohn Innes Centre, Norwich, UK.
Tom BatstoneSchool of Biological Sciences, University of Bristol, Bristol, UK.
Bethan F ManleySchool of Biological Sciences, University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0002-0137-6953
Kan TanakaLaboratory for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Sousuke ImamuraLaboratory for Chemistry and Life Science, Institute for Innovative Research, Tokyo Institute of Technology, Yokohama, Japan.
Keara A FranklinSchool of Biological Sciences, University of Bristol, Bristol, UK.
Heather KnightDepartment of Biosciences, Durham University, Durham, UK.
Antony N DoddJohn Innes Centre, Norwich, UK. antony.dodd@jic.ac.uk.ORCID http://orcid.org/0000-0001-6859-0105
John Innes Centre · GBTokyo Institute of Technology · JPUniversity of Bristol · GBDurham University · GBUniversity of Cambridge · GBWellcome Sanger Institute · GB

Funding

Ministry of Education, Culture, Sports, Science and Technology (MEXT) 17K07438RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/I005811/2RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/J014400/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/P013511/1RCUK | Biotechnology and Biological Sciences Research Council (BBSRC) BB/T008717/1
6 · The paper itself

Abstract

Chloroplasts are a common feature of plant cells and aspects of their metabolism, including photosynthesis, are influenced by low-temperature conditions. Chloroplasts contain a small circular genome that encodes essential components of the photosynthetic apparatus and chloroplast transcription/translation machinery. Here, we show that in Arabidopsis, a nuclear-encoded sigma factor that controls chloroplast transcription (SIGMA FACTOR5) contributes to adaptation to low-temperature conditions. This process involves the regulation of SIGMA FACTOR5 expression in response to cold by the bZIP transcription factors ELONGATED HYPOCOTYL5 and ELONGATED HYPOCOTYL5 HOMOLOG. The response of this pathway to cold is gated by the circadian clock, and it enhances photosynthetic efficiency during long-term cold and freezing exposure. We identify a process that integrates low-temperature and circadian signals, and modulates the response of chloroplasts to low-temperature conditions.

Indexed as

ArabidopsisArabidopsis ProteinsGene Expression Regulation, PlantPhotosynthesisSigma FactorTemperatureArabidopsis ProteinsSigma Factor

Identifiers

PMID36997687
PMCPMC10119024
OpenAlexW4362459267

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.