Evidence map›Paper›PMID 36997626›Full record

ArticleCommunications biology2023

Hominoid SVA-lncRNA AK057321 targets human-specific SVA retrotransposons in SCN8A and CDK5RAP2 to initiate neuronal maturation.

Monica J S Nadler, Weipang Chang, Ekim Ozkaynak, Yuda Huo, Yi Nong, Morgane Boillot, Mark Johnson, Antonio Moreno, Matthew P Anderson

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Monica J S NadlerDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Weipang ChangDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Ekim OzkaynakDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Yuda HuoDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Yi NongDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Morgane BoillotDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Mark JohnsonDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Antonio MorenoDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA.
Matthew P AndersonDepartment of Neurology, Beth Israel Deaconess Medical Center, 330 Brookline Avenue, Boston, MA, 02115, USA. matthewanderson020@gmail.com.ORCID 0000-0003-4602-1811
Beth Israel Deaconess Medical Center · USBoston University · US

Funding

SYNAPTIC MECHANISMS IN HIPPOCAMPAL EPILEPTOGENESISP30HD018655 · NICHD · CHILDREN'S HOSPITAL BOSTON · PI POMEROY, SCOTT LOREN · 1985 to 2015
$26.2M
Mouse Neurodevelopmental Behavior CoreU54HD090255 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI POMEROY, SCOTT LOREN · 2016 to 2020
$5.2M
VTA VGluT2 Sociability Circuit in Genetic AutismR01MH112714 · NIMH · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SAPER, CLIFFORD B · 2018 to 2022
$2.2M
Neurobiology of Aggression Comorbidity in AutismR01MH114858 · NIMH · BETH ISRAEL DEACONESS MEDICAL CENTER · PI SAPER, CLIFFORD B · 2017 to 2021
$2.2M
Neurobiology of Aggression Co-morbidity in Mouse Model of Idic15 AutismR21MH100868 · NIMH · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ANDERSON, MATTHEW P · 2013 to 2014
$479k
Conditional Genetics Rescue of Angelman SyndromeR21HD079249 · NICHD · BETH ISRAEL DEACONESS MEDICAL CENTER · PI ANDERSON, MATTHEW P · 2014 to 2015
$456k
NICHD NIH HHS P30 HD018655NICHD NIH HHS R21 HD079249NICHD NIH HHS U54 HD090255NIMH NIH HHS R01 MH112714NIMH NIH HHS R01 MH114858NIMH NIH HHS R21 MH100868
6 · The paper itself

Abstract

SINE-VNTR-Alu (SVA) retrotransposons arose and expanded in the genome of hominoid primates concurrent with the slowing of brain maturation. We report genes with intronic SVA transposons are enriched for neurodevelopmental disease and transcribed into long non-coding SVA-lncRNAs. Human-specific SVAs in microcephaly CDK5RAP2 and epilepsy SCN8A gene introns repress their expression via transcription factor ZNF91 to delay neuronal maturation. Deleting the SVA in CDK5RAP2 initiates multi-dimensional and in SCN8A selective sodium current neuronal maturation by upregulating these genes. SVA-lncRNA AK057321 forms RNA:DNA heteroduplexes with the genomic SVAs and upregulates these genes to initiate neuronal maturation. SVA-lncRNA AK057321 also promotes species-specific cortex and cerebellum-enriched expression upregulating human genes with intronic SVAs (e.g., HTT, CHAF1B and KCNJ6) but not mouse orthologs. The diversity of neuronal genes with intronic SVAs suggest this hominoid-specific SVA transposon-based gene regulatory mechanism may act at multiple steps to specialize and achieve neoteny of the human brain.

Indexed as

RetroelementsRNA, Long NoncodingAnimalsCell Cycle ProteinsChromatin Assembly Factor-1HumansMinisatellite RepeatsNAV1.6 Voltage-Gated Sodium ChannelNerve Tissue ProteinsPrimatesShort Interspersed Nucleotide ElementsCDK5RAP2 protein, humanCell Cycle ProteinsCHAF1B protein, humanChromatin Assembly Factor-1NAV1.6 Voltage-Gated Sodium ChannelNerve Tissue ProteinsRetroelementsRNA, Long NoncodingSCN8A protein, human

Identifiers

PMID36997626
PMCPMC10063665
OpenAlexW4361279363

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.