Evidence map›Paper›PMID 36997301›Full record

ReviewGut2023

It is better to light a candle than to curse the darkness: single-cell transcriptomics sheds new light on pancreas biology and disease.

Amelia T Cephas, William L Hwang, Anirban Maitra, Oren Parnas, Kathleen E DelGiorno

Open access · bronzeAbstract readReview
In one paragraph

Review in Gut, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 2 countries.

Amelia T CephasCell and Developmental Biology, Vanderbilt University, Nashville, Tennessee, USA.ORCID 0000-0002-8810-1206
William L HwangCenter for Systems Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.ORCID 0000-0003-4514-8837
Anirban MaitraDepartment of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, Texas, USA.
Oren ParnasLautenberg Center for Immunology and Cancer Research, IMRIC, Faculty of Medicine, The Hebrew University of Jerusalem, Jerusalem, Israel kathleen.delgiorno@vanderbilt.edu oren.parnas@gmail.com.
Kathleen E DelGiornoCell and Developmental Biology, Vanderbilt University, Nashville, Tennessee, USA kathleen.delgiorno@vanderbilt.edu oren.parnas@gmail.com.ORCID 0000-0002-5749-8394
Vanderbilt University · USBroad Institute · USHebrew University of Jerusalem · ILThe University of Texas MD Anderson Cancer Center · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
Translational Analysis CoreP30DK058404 · NIDDK · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MARY Kay WASHINGTON · 2002 to 2026
$29.9M
Vanderbilt-Ingram Cancer Center SPORE in Gastrointestinal CancerP50CA236733 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI STEPHEN W. FESIK · 2019 to 2026
$19.6M
SPORE IN BREAST CANCERP50CA068438 · NCI · DUKE UNIVERSITY · PI LYERLY, HERBERT KIM · 1995 to 2007
$14.3M
Project 3: Inhibiting Oxidative Phosphorylation in Pancreatic CancerP50CA221707 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI KOPETZ, SCOTT · 2019 to 2023
$11.0M
Clinical Validation Center for Early Detection of Pancreatic CancerU01CA200468 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI ANIRBAN MAITRA · 2016 to 2026
$11.0M
Tumor Microenvironment Crosstalk Drives Early Lesions in Pancreatic CancerU54CA274371 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Elana Fertig · 2022 to 2026
$9.5M
PASSCODE (Pancreatic Adenocarcinoma Stromal Reprograming ConSortium COordination, Data Management and Education)U24CA274274 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI J. Jack LEE, ANIRBAN MAITRA · 2022 to 2026
$4.9M
A multi-modality approach to decode epithelial heterogeneity and function in metaplasiaR35GM142709 · NIGMS · VANDERBILT UNIVERSITY · PI DELGIORNO, KATHLEEN ELIZABETH · 2021 to 2025
$2.0M
Wnt/?-catenin Signaling in Pancreatic OncogenesisR01CA220236 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI MAITRA, ANIRBAN · 2017 to 2023
$1.8M
Elucidating cancer-intrinsic mechanisms of perineural invasion in pancreatic cancerK08CA270417 · NCI · MASSACHUSETTS GENERAL HOSPITAL · PI William L Hwang · 2022 to 2026
$1.6M
Training Program in Translational ResearchT32GM113900 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIEBERMAN, ANDREW P, NIKOLOVSKA-COLESKA, ZANETA · 2016 to 2020
$991k
NCI NIH HHS K08 CA270417NCI NIH HHS P30 CA068485NCI NIH HHS P50 CA068438NCI NIH HHS P50 CA221707NCI NIH HHS P50 CA236733NCI NIH HHS R01 CA220236NCI NIH HHS U01 CA200468NCI NIH HHS U24 CA274274NCI NIH HHS U54 CA274371NIDDK NIH HHS P30 DK058404NIGMS NIH HHS F32 GM139400NIGMS NIH HHS R35 GM142709NIGMS NIH HHS T32 GM113900
6 · The paper itself

Abstract

Recent advances in single-cell RNA sequencing and bioinformatics have drastically increased our ability to interrogate the cellular composition of traditionally difficult to study organs, such as the pancreas. With the advent of these technologies and approaches, the field has grown, in just a few years, from profiling pancreas disease states to identifying molecular mechanisms of therapy resistance in pancreatic ductal adenocarcinoma, a particularly deadly cancer. Single-cell transcriptomics and related spatial approaches have identified previously undescribed epithelial and stromal cell types and states, how these populations change with disease progression, and potential mechanisms of action which will serve as the basis for designing new therapeutic strategies. Here, we review the recent literature on how single-cell transcriptomic approaches have changed our understanding of pancreas biology and disease progression.

Indexed as

Carcinoma, Pancreatic DuctalPancreatic NeoplasmsBiologyDarknessDisease ProgressionHumansPancreasTranscriptomepancreatic cancerpancreatic fibrosispancreatitis

Identifiers

PMID36997301
PMCPMC10988578
OpenAlexW4361256390

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.