Evidence map›Paper›PMID 36996377›Full record

ArticleJCO precision oncology2023

Clinical Targeted Next-Generation Panel Sequencing Reveals

Amanda E Marinoff, Liam F Spurr, Christina Fong, Yvonne Y Li, Suzanne J Forrest, Abigail Ward, Duong Doan, Laura Corson, Audrey Mauguen, Navin Pinto and 21 more

Open access · greenAbstract read
In one paragraph

Article in JCO precision oncology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed, 1 pooled it
6.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 1 synthesis or guideline pooled it, 26 citations in OpenAlex.

  1. Biological Sample Collection to Advance Research and Treatment: A Fight Osteosarcoma Through European Research and Euro Ewing Consortium Statement.Clinical cancer research : an official journal of the American Association for Cancer Research · 2024
    Guideline
  2. Trial
  3. Drug sensitivity testing of patient-derived bone sarcomas identifies selective kinase inhibitors for patients with refractory disease.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2026
    Article
  4. Review
  5. Review
  6. Integrated Multiomic Profiling Enhances Risk Stratification and Prognostication in Canine Osteosarcoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. The oncogenome of the domestic cat.Science (New York, N.Y.) · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors at 15 institutions in 1 country.

Amanda E MarinoffPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Liam F SpurrBroad Institute of Harvard and MIT, Boston, MA.ORCID 0000-0001-6465-7739
Christina FongDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-9964-5877
Yvonne Y LiHarvard Medical School, Boston, MA.
Suzanne J ForrestPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.ORCID 0000-0002-9797-7947
Abigail WardPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Duong DoanPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Laura CorsonPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.ORCID 0000-0003-2772-3375
Audrey MauguenDepartment of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0003-3236-6093
Navin PintoDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of Washington, Seattle, WA.ORCID 0000-0002-8775-6710
Luke MaeseUniversity of Utah, Huntsman Cancer Institute, and Primary Children's Hospital, Salt Lake City, UT.ORCID 0000-0002-8739-9100
Susan ColacePediatric Hematology/Oncology/Blood and Marrow Transplant, Nationwide Children's Hospital, Columbus, OH.ORCID 0000-0003-3868-3655
Margaret E MacyDepartment of Pediatric Hematology/Oncology, University of Colorado and The Center for Cancer and Blood Disorders, Colorado Children's Hospital, Denver, CO.ORCID 0000-0001-6446-9180
AeRang KimCenter for Cancer and Blood Disorders, Children's National Medical Center, Washington, DC.
Amit J SabnisPediatric Hematology/Oncology, UCSF Benioff Children's Hospital, San Francisco, CA.ORCID 0000-0002-2061-5139
Mark A ApplebaumDepartment of Pediatrics, University of Chicago, Chicago, IL.ORCID 0000-0001-9766-8477
Theodore W LaetschDivision of Oncology, Department of Pediatrics, Children's Hospital of Philadelphia and University of Pennsylvania, Philadelphia, PA.ORCID 0000-0002-8497-3138
Julia Glade-BenderDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-5316-6440
Daniel A WeiserDepartment of Pediatric Hematology/Oncology, Children's Hospital at Montefiore, New York, NY.ORCID 0000-0001-6673-5323
Megan AndersonHarvard Medical School, Boston, MA.
Brian D CromptonPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.ORCID 0000-0001-9404-6621
Paul MeyersDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-6146-6101
Ahmet ZehirDepartment of Epidemiology & Biostatistics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-5406-4104
Laura MacConaillDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, MA.ORCID 0000-0002-0220-4715
Neal LindemanDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.
Jonathan A NowakDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA.ORCID 0000-0002-0943-7407
Marc LadanyiDepartment of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0001-9055-7213
Alanna J ChurchHarvard Medical School, Boston, MA.ORCID 0000-0002-4835-5770
Andrew D CherniackHarvard Medical School, Boston, MA.ORCID 0000-0003-0470-0111
Neerav ShuklaDepartment of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY.ORCID 0000-0003-2516-2965
Katherine A JanewayPediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.ORCID 0000-0001-6000-3594
Memorial Sloan Kettering Cancer Center · USHarvard University · USBrigham and Women's Hospital · USBroad Institute · USDana-Farber/Boston Children's Cancer and Blood Disorders Center · USBoston Children's Hospital · USCenter for Cancer and Blood Disorders · USChildren's Hospital at Montefiore · USChildren's Hospital of Philadelphia · USChildren's National · USNationwide Children's Hospital · USPrimary Children's Hospital · USUCSF Benioff Children's Hospital · USUniversity of Chicago · USUniversity of Washington · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Research Training in Childhood CancerT32CA128583 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Eric Alejandro Sweet-Cordero · 2007 to 2026
$6.0M
Defining and targeting ER quality control dependence in rhabdomyosarcomaK08CA218691 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SABNIS, AMIT J. · 2018 to 2022
$1.1M
NCI NIH HHS K08 CA218691NCI NIH HHS P30 CA008748NCI NIH HHS T32 CA128583
6 · The paper itself

Abstract

purposeOsteosarcoma risk stratification, on the basis of the presence of metastatic disease at diagnosis and histologic response to chemotherapy, has remained unchanged for four decades, does not include genomic features, and has not facilitated treatment advances. We report on the genomic features of advanced osteosarcoma and provide evidence that genomic alterations can be used for risk stratification. MATERIALS AND

methodsIn a primary analytic patient cohort, 113 tumor and 69 normal samples from 92 patients with high-grade osteosarcoma were sequenced with OncoPanel, a targeted next-generation sequencing assay. In this primary cohort, we assessed the genomic landscape of advanced disease and evaluated the correlation between recurrent genomic events and outcome. We assessed whether prognostic associations identified in the primary cohort were maintained in a validation cohort of 86 patients with localized osteosarcoma tested with MSK-IMPACT.

resultsIn the primary cohort, 3-year overall survival (OS) was 65%. Metastatic disease, present in 33% of patients at diagnosis, was associated with poor OS (

conclusionThe most frequently occurring genomic events in advanced osteosarcoma were similar to those described in prior reports.

Indexed as

Bone NeoplasmsOsteosarcomaGene AmplificationHigh-Throughput Nucleotide SequencingHumansMutationPrognosisProto-Oncogene Proteins c-mycMYC protein, humanProto-Oncogene Proteins c-myc

Identifiers

PMID36996377
PMCPMC10531050
OpenAlexW4361253250

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.