Evidence map›Paper›PMID 36995904›Full record

ArticleAngewandte Chemie (International ed. in English)2023

Crystal Structure of an i-Motif from the HRAS Oncogene Promoter.

Kevin S Li, Deondre Jordan, Linda Y Lin, Sawyer E McCarthy, John S Schneekloth, Liliya A Yatsunyk

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Kevin S LiDepartment Chemistry and Biochemistry, Swarthmore College, 500 College Ave, Swarthmore, PA 19081, USA.
Deondre JordanDepartment Chemistry and Biochemistry, Swarthmore College, 500 College Ave, Swarthmore, PA 19081, USA.
Linda Y LinDepartment Chemistry and Biochemistry, Swarthmore College, 500 College Ave, Swarthmore, PA 19081, USA.ORCID 0000-0001-5011-1305
Sawyer E McCarthyDepartment Chemistry and Biochemistry, Swarthmore College, 500 College Ave, Swarthmore, PA 19081, USA.ORCID 0000-0002-1063-1784
John S SchneeklothChemical Biology Laboratory, National Cancer Institute, National Institute of Health, Frederick, MD 21702, USA.
Liliya A YatsunykDepartment Chemistry and Biochemistry, Swarthmore College, 500 College Ave, Swarthmore, PA 19081, USA.ORCID 0000-0003-3946-0939
Swarthmore College · USFrederick National Laboratory for Cancer Research · US

Funding

User Training and OutreachP30GM124165 · NIGMS · CORNELL UNIVERSITY · PI MALCOLM S. CAPEL · 2018 to 2026
$34.2M
Identification of Nucleic Acid Binding Small MoleculesZIABC011585 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SCHNEEKLOTH, JOHN · 2014 to 2025
$18.6M
Deciphering the structure and dynamics of non-canonical DNA implicated in cancerR15CA253134 · NCI · SWARTHMORE COLLEGE · PI YATSUNYK, LILIYA A · 2020 to 2020
$432k
Intramural NIH HHS ZIA BC011585NCI NIH HHS R15 CA253134NIGMS NIH HHS P30 GM124165
6 · The paper itself

Abstract

An i-motif is a non-canonical DNA structure implicated in gene regulation and linked to cancers. The C-rich strand of the HRAS oncogene, 5'-CGCCCGTGCCCTGCGCCCGCAACCCGA-3' (herein referred to as iHRAS), forms an i-motif in vitro but its exact structure was unknown. HRAS is a member of the RAS proto-oncogene family. About 19 % of US cancer patients carry mutations in RAS genes. We solved the structure of iHRAS at 1.77 Å resolution. The structure reveals that iHRAS folds into a double hairpin. The two double hairpins associate in an antiparallel fashion, forming an i-motif dimer capped by two loops on each end and linked by a connecting region. Six C-C

Indexed as

DNAOncogenesBase PairingHumansNucleic Acid ConformationPromoter Regions, GeneticProto-Oncogene Proteins p21(ras)DNAHRAS protein, humanProto-Oncogene Proteins p21(ras)DimersGene Regulationi-MotifsNon-Canonical Base PairingX-Ray Crystallography

Identifiers

PMID36995904
PMCPMC10330059
OpenAlexW4361278744

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.