Evidence map›Paper›PMID 36995558›Full record

ArticleJournal of assisted reproduction and genetics2023

Detection of spermatogonial stem/progenitor cells in prepubertal mouse testis with deep learning.

Burak Kahveci, Selin Önen, Fuat Akal, Petek Korkusuz

Open access · greenAbstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. An efficient advanced YOLOv8 framework for sperm motility detection.Journal of assisted reproduction and genetics · 2025
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Burak KahveciDepartment of Bioengineering, Graduate School of Science and Engineering, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0001-7041-0986
Selin ÖnenDepartment of Stem Cell Sciences, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0002-3255-3035
Fuat AkalComputer Engineering Department, Hacettepe University, Ankara, Turkey.ORCID http://orcid.org/0000-0003-2582-4180
Petek KorkusuzDepartment of Histology and Embryology, Faculty of Medicine, Hacettepe University, Sihhiye, 06100, Ankara, Turkey. petek@hacettepe.edu.tr.ORCID http://orcid.org/0000-0002-7553-3915
Hacettepe University · TRAtilim University · TR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeRapid and easy detection of spermatogonial stem/progenitor cells (SSPCs) is crucial for clinicians dealing with male infertility caused by prepubertal testicular damage. Deep learning (DL) methods may offer visual tools for tracking SSPCs on testicular strips of prepubertal animal models. The purpose of this study is to detect and count the seminiferous tubules and SSPCs in newborn mouse testis sections using a DL method.

methodsTesticular sections of the C57BL/6-type newborn mice were obtained and enumerated. Odd-numbered sections were stained with hematoxylin and eosin (H&E), and even-numbered sections were immune labeled (IL) with SSPC specific marker, SALL4. Seminiferous tubule and SSPC datasets were created using odd-numbered sections. SALL4-labeled sections were used as positive control. The YOLO object detection model based on DL was used to detect seminiferous tubules and stem cells.

resultsTest scores of the DL model in seminiferous tubules were obtained as 0.98 mAP, 0.93 precision, 0.96 recall, and 0.94 f1-score. The SSPC test scores were obtained as 0.88 mAP, 0.80 precision, 0.93 recall, and 0.82 f1-score.

conclusionSeminiferous tubules and SSPCs on prepubertal testicles were detected with a high sensitivity by preventing human-induced errors. Thus, the first step was taken for a system that automates the detection and counting process of these cells in the infertility clinic.

Indexed as

Deep LearningTestisAnimalsHumansMaleMiceMice, Inbred C57BLSpermatogenesisSpermatogoniaStem CellsComputer visionDeep learningSpermatogonial stem/progenitor cellsTestisYOLO object detection

Identifiers

PMID36995558
PMCPMC10239423
OpenAlexW4361273418

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.