Evidence map›Paper›PMID 36995340›Full record

ArticleThe Journal of experimental medicine2023

Phagocytosis increases an oxidative metabolic and immune suppressive signature in tumor macrophages.

Michael A Gonzalez, Daniel R Lu, Maryam Yousefi, Ashley Kroll, Chen Hao Lo, Carlos G Briseño, J E Vivienne Watson, Sergey Novitskiy, Vanessa Arias, Hong Zhou and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
9.0field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 55 citations in OpenAlex.

  1. Review
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  9. Ovarian hormone deficiency enhances wood smoke-induced immune dysfunction via transcriptomic and metabolic alterations.Toxicological sciences : an official journal of the Society of Toxicology · 2026
    Article
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  20. Metabolic Programming Drives Protective and Inflammatory Monocyte Fates in Viral Encephalitis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Michael A Gonzalez *Amgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0003-2042-6255
Daniel R Lu *Amgen Research, Research Biomics , South San Francisco, CA, USA.ORCID 0000-0002-7143-7926
Maryam YousefiDepartment of Genetics, Stanford University School of Medicine , Stanford, CA, USA.ORCID 0000-0002-5546-6620
Ashley KrollAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0003-4148-7970
Chen Hao LoAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0001-8848-2507
Carlos G BriseñoAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0002-4159-3864
J E Vivienne WatsonAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0002-4652-3670
Sergey NovitskiyAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0002-5051-0952
Vanessa AriasAmgen Research, Research Biomics , South San Francisco, CA, USA.ORCID 0000-0002-0748-5894
Hong ZhouAmgen Research, Research Biomics , South San Francisco, CA, USA.ORCID 0000-0003-0120-3347
Andres Plata StapperAmgen Research, Research Biomics , South San Francisco, CA, USA.ORCID 0000-0003-3183-9645
Min K TsaiDepartment of Genetics, Stanford University School of Medicine , Stanford, CA, USA.ORCID 0000-0003-4732-4259
Emily L AshkinCancer Biology Program, Stanford University School of Medicine , Stanford, CA, USA.ORCID 0000-0001-7363-7860
Christopher W MurrayCancer Biology Program, Stanford University School of Medicine , Stanford, CA, USA.ORCID 0000-0001-7027-892X
Chi-Ming LiAmgen Research, Research Biomics , South San Francisco, CA, USA.ORCID 0000-0002-2740-5652
Monte M WinslowDepartment of Genetics, Stanford University School of Medicine , Stanford, CA, USA.ORCID 0000-0002-5730-9573
Kristin V TarbellAmgen Research, Oncology , South San Francisco, CA, USA.ORCID 0000-0003-3738-379X
Amgen (United States) · USStanford University · US

Funding

Unraveling mechanisms of tumor suppression in lung cancerR01CA234349 · NCI · STANFORD UNIVERSITY · PI PETROV, DMITRI, WINSLOW, MONTE MEIER · 2019 to 2023
$2.4M
(PQ4) Quantitative and multiplexed analysis of gene function in cancer in vivoR01CA231253 · NCI · STANFORD UNIVERSITY · PI PETROV, DMITRI, WINSLOW, MONTE MEIER · 2018 to 2022
$2.3M
Therapeutic dissection of genotype-specific lung cancer vulnerabilitiesF32CA236311 · NCI · STANFORD UNIVERSITY · PI YOUSEFI, MARYAM · 2019 to 2021
$169k
Howard Hughes Medical Institute GT14928NCI NIH HHS F32 CA236311NCI NIH HHS R01 CA231253NCI NIH HHS R01 CA234349
6 · The paper itself

Abstract

Phagocytosis is a key macrophage function, but how phagocytosis shapes tumor-associated macrophage (TAM) phenotypes and heterogeneity in solid tumors remains unclear. Here, we utilized both syngeneic and novel autochthonous lung tumor models in which neoplastic cells express the fluorophore tdTomato (tdTom) to identify TAMs that have phagocytosed neoplastic cells in vivo. Phagocytic tdTompos TAMs upregulated antigen presentation and anti-inflammatory proteins, but downregulated classic proinflammatory effectors compared to tdTomneg TAMs. Single-cell transcriptomic profiling identified TAM subset-specific and common gene expression changes associated with phagocytosis. We uncover a phagocytic signature that is predominated by oxidative phosphorylation (OXPHOS), ribosomal, and metabolic genes, and this signature correlates with worse clinical outcome in human lung cancer. Expression of OXPHOS proteins, mitochondrial content, and functional utilization of OXPHOS were increased in tdTompos TAMs. tdTompos tumor dendritic cells also display similar metabolic changes. Our identification of phagocytic TAMs as a distinct myeloid cell state links phagocytosis of neoplastic cells in vivo with OXPHOS and tumor-promoting phenotypes.

Indexed as

Lung NeoplasmsMacrophagesHumansMyeloid CellsOxidative StressPhagocytosisTumor Microenvironment

Identifiers

PMID36995340
PMCPMC10067971
OpenAlexW4361301811

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.