Evidence map›Paper›PMID 36995257›Full record

ArticleDisease models & mechanisms2023

Overexpression screen of chromosome 21 genes reveals modulators of Sonic hedgehog signaling relevant to Down syndrome.

Anna J Moyer, Fabian-Xosé Fernandez, Yicong Li, Donna K Klinedinst, Liliana D Florea, Yasuhiro Kazuki, Mitsuo Oshimura, Roger H Reeves

Open access · goldAbstract read
In one paragraph

Article in Disease models & mechanisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
9.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Review
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  6. Characterisation of aEndocrine oncology (Bristol, England) · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Anna J MoyerDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0003-1912-1745
Fabian-Xosé FernandezDepartment of Psychology, University of Arizona, Tucson, AZ 85724, USA.ORCID 0000-0002-4288-5383
Yicong LiDepartment of Physiology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Donna K KlinedinstDepartment of Physiology, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-9901-3682
Liliana D FloreaDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0001-8124-2324
Yasuhiro KazukiDivision of Genome and Cellular Functions, Department of Molecular and Cellular Biology, School of Life Science, Faculty of Medicine and Chromosome Engineering Research Center, Tottori University, 86 Nishi-cho, Yonago, Tottori 683-8503, Japan.
Mitsuo OshimuraChromosome Engineering Research Center, Tottori University, Yonago, Tottori 683-8503, Japan.
Roger H ReevesDepartment of Genetic Medicine, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.ORCID 0000-0002-3581-0850
Johns Hopkins University · USTottori University · JPUniversity of Arizona · US

Funding

GENOMIC APPROACHES TO ANEUPLOIDYR01HD038384 · NICHD · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 2000 to 2020
$11.0M
Predoctoral Training Program in Human GeneticsT32GM007814 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI VALLE, DAVID · 1985 to 2021
$10.6M
Sleep and Circadian Dysfunction, Brain and Neurobehavioral Development in AutismP50HD103538 · NICHD · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI S. Ali Fatemi, Bradley L Schlaggar · 2020 to 2026
$9.9M
Translational Neuroscience CoreU54HD079123 · NICHD · HUGO W. MOSER RES INST KENNEDY KRIEGER · PI FATEMI, S. ALI · 2014 to 2019
$7.9M
Computational Methods to Characterize Alternative Splicing from Massive Collections of RNA-seq DataR01GM129085 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI FLOREA, LILIANA D · 2019 to 2022
$1.5M
Hedgehog Treatment of Down Syndrome: Establishing MechanismsR21HD082614 · NICHD · JOHNS HOPKINS UNIVERSITY · PI REEVES, ROGER H · 2014 to 2015
$440k
Cerebellar hypoplasia and chromosome elimination in mouse models of Down syndromeF31HD098826 · NICHD · JOHNS HOPKINS UNIVERSITY · PI MOYER, ANNA JOYCE · 2019 to 2021
$114k
NICHD NIH HHS F31 HD098826NICHD NIH HHS P50 HD103538NICHD NIH HHS R01 HD038384NICHD NIH HHS R21 HD082614NICHD NIH HHS U54 HD079123NIGMS NIH HHS R01 GM129085NIGMS NIH HHS T32 GM007814
6 · The paper itself

Abstract

Trisomy 21 and mutations in the Sonic hedgehog (SHH) signaling pathway cause overlapping and pleiotropic phenotypes including cerebellar hypoplasia, craniofacial abnormalities, congenital heart defects and Hirschsprung disease. Trisomic cells derived from individuals with Down syndrome possess deficits in SHH signaling, suggesting that overexpression of human chromosome 21 genes may contribute to SHH-associated phenotypes by disrupting normal SHH signaling during development. However, chromosome 21 does not encode any known components of the canonical SHH pathway. Here, we sought to identify chromosome 21 genes that modulate SHH signaling by overexpressing 163 chromosome 21 cDNAs in a series of SHH-responsive mouse cell lines. We confirmed overexpression of trisomic candidate genes using RNA sequencing in the cerebella of Ts65Dn and TcMAC21 mice, model systems for Down syndrome. Our findings indicate that some human chromosome 21 genes, including DYRK1A, upregulate SHH signaling, whereas others, such as HMGN1, inhibit SHH signaling. Individual overexpression of four genes (B3GALT5, ETS2, HMGN1 and MIS18A) inhibits the SHH-dependent proliferation of primary granule cell precursors. Our study prioritizes dosage-sensitive chromosome 21 genes for future mechanistic studies. Identification of the genes that modulate SHH signaling may suggest new therapeutic avenues for ameliorating Down syndrome phenotypes.

Indexed as

Down SyndromeHMGN1 ProteinAnimalsChromosomes, Human, Pair 21Hedgehog ProteinsHumansMiceSignal TransductionHedgehog ProteinsHMGN1 ProteinAneuploidyDown syndromeGene dosage effectsGenetic screenSonic hedgehogTrisomy 21

Identifiers

PMID36995257
PMCPMC10120076
OpenAlexW4361270772

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.