Evidence map›Paper›PMID 36993432›Full record

ArticlebioRxiv : the preprint server for biology2024

SPLASH2 provides ultra-efficient, scalable, and unsupervised discovery on raw sequencing reads.

Marek Kokot, Roozbeh Dehghannasiri, Tavor Baharav, Julia Salzman, Sebastian Deorowicz

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 10 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Marek KokotDepartment of Algorithmics and Software, Silesian University of Technology, Gliwice, Poland.ORCID 0000-0002-6420-1587
Roozbeh DehghannasiriDepartment of Biomedical Data Science, Stanford University, Stanford, 94305, USA.ORCID 0000-0001-7413-3437
Tavor BaharavDepartment of Electrical Engineering, Stanford University, Stanford, 94305, USA.ORCID 0000-0001-8924-0243
Julia SalzmanDepartment of Biomedical Data Science, Stanford University, Stanford, 94305, USA.ORCID 0000-0001-7630-3436
Sebastian DeorowiczDepartment of Algorithmics and Software, Silesian University of Technology, Gliwice, Poland.ORCID 0000-0002-9496-733X
Stanford University · USSilesian University of Technology · PL

Funding

Computational- and experimental- driven discovery of splicing regulation and circRNA functionR35GM139517 · NIGMS · STANFORD UNIVERSITY · PI Julia Salzman · 2021 to 2026
$2.9M
NIGMS NIH HHS R35 GM139517
6 · The paper itself

Abstract

SPLASH is an unsupervised, reference-free, and unifying algorithm that discovers regulated sequence variation through statistical analysis of

Identifiers

PMID36993432
PMCPMC10055302
OpenAlexW4328052619

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.