Evidence map›Paper›PMID 36993193›Full record

ArticlemedRxiv : the preprint server for health sciences2023

VMAP: Vaginal Microbiome Atlas During Pregnancy.

Antonio Parraga-Leo, Tomiko T Oskotsky, Boris Oskotsky, Camilla Wibrand, Alennie Roldan, Alice Tang, Connie W Y Ha, Ronald J Wong, Samuel S Minot, Gaia Andreoletti and 14 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. The hormonal control of parturition.Physiological reviews · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Antonio Parraga-LeoBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Tomiko T OskotskyBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Boris OskotskyBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Camilla WibrandBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Alennie RoldanBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Alice TangBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Connie W Y HaBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.
Ronald J WongDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.
Samuel S MinotData Core, Fred Hutchinson Cancer Center. Seattle, WA. USA.
Gaia AndreolettiBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Idit KostiBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.
Kevin R TheisImperial College Parturition Research Group, Division of the Institute of Reproduction and Developmental Biology, Imperial College London, UK.
Sherrianne NgImperial College Parturition Research Group, Division of the Institute of Reproduction and Developmental Biology, Imperial College London, UK.
Yun S LeeImperial College Parturition Research Group, Division of the Institute of Reproduction and Developmental Biology, Imperial College London, UK.
Patricia Diaz-GimenoInstituto de Investigación Sanitaria La Fe (IIS La Fe), IVI Foundation, Valencia, Spain.
Phillip R BennettImperial College Parturition Research Group, Division of the Institute of Reproduction and Developmental Biology, Imperial College London, UK.
David A MacIntyreImperial College Parturition Research Group, Division of the Institute of Reproduction and Developmental Biology, Imperial College London, UK.
Susan V LynchBenioff Center for Microbiome Medicine, Department of Medicine, University of California, San Francisco, CA. USA.
Roberto RomeroPerinatology Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services, Detroit, MI. USA.
Adi L TarcaPerinatology Research Branch, Division of Obstetrics and Maternal-Fetal Medicine, Division of Intramural Research, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, US Department of Health and Human Services, Detroit, MI. USA.
David K StevensonDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.
Nima AghaeepourDepartment of Pediatrics, Stanford University School of Medicine, Stanford, CA. USA.
Jonathan GolobMarch of Dimes Prematurity Research Center at the University of California San Francisco, San Francisco, CA USA.
Marina SirotaBakar Computational Health Sciences Institute, University of California San Francisco, San Francisco, CA. USA.

Funding

Stanford Alzheimer's Disease Research CenterAdmin Supp: Developing iPSC models for AD and PDP30AG066515 · NIA · STANFORD UNIVERSITY · PI Lisa Goldman Rosas · 2020 to 2026
$29.0M
Preeclampsia to cardiovascular disease: Life course analysis of biomarkers and riskR01HL139844 · NHLBI · STANFORD UNIVERSITY · PI HLATKY, MARK A., WINN, VIRGINIA D · 2018 to 2021
$9.0M
UCSF Stanford Endometriosis Center for Discovery, Innovation, Training and Community EngagementP01HD106414 · NICHD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GAUDILLIERE, BRICE, GIUDICE, LINDA C · 2021 to 2025
$7.1M
Trio Analysis of Recurrent Pregnancy Loss Integrated Bioinformatics Genomics Study (TRIOS)R01HD105256 · NICHD · STANFORD UNIVERSITY · PI LATHI, RUTH B, RAJKOVIC, ALEKSANDAR · 2021 to 2025
$7.0M
SPRINT: Signature for Pain Recovery IN TeensR61NS114926 · NINDS · STANFORD UNIVERSITY · PI SIMONS, LAURA E · 2019 to 2019
$5.4M
Dietary Modulation of Neuroinflammation in Age-Related Memory DisordersR01AG058417 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SLOAN, RICHARD P, SMALL, SCOTT A · 2018 to 2022
$4.2M
Machine Learning for Integrative Modeling of the Immune System in Clinical SettingsR35GM138353 · NIGMS · STANFORD UNIVERSITY · PI AGHAEEPOUR, NIMA · 2020 to 2024
$2.2M
NHLBI NIH HHS R01 HL139844NIA NIH HHS P30 AG066515NIA NIH HHS R01 AG058417NICHD NIH HHS P01 HD106414NICHD NIH HHS R01 HD105256NIGMS NIH HHS R35 GM138353NINDS NIH HHS R61 NS114926
6 · The paper itself

Abstract

The vaginal microbiome has been shown to be associated with pregnancy outcomes including preterm birth (PTB) risk. Here we present VMAP: Vaginal Microbiome Atlas during Pregnancy (http://vmapapp.org), an application to visualize features of 3,909 vaginal microbiome samples of 1,416 pregnant individuals from 11 studies, aggregated from raw public and newly generated sequences via an open-source tool, MaLiAmPi. Our visualization tool (http://vmapapp.org) includes microbial features such as various measures of diversity, VALENCIA community state types (CST), and composition (via phylotypes and taxonomy). This work serves as a resource for the research community to further analyze and visualize vaginal microbiome data in order to better understand both healthy term pregnancies and those associated with adverse outcomes.

Identifiers

PMID36993193
PMCPMC10055588

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.