Evidence map›Paper›PMID 36992447›Full record

ArticleViruses2023

Co-Surveillance of Rotaviruses in Humans and Domestic Animals in Central Uganda Reveals Circulation of Wide Genotype Diversity in the Animals.

Josephine Bwogi, Charles Karamagi, Denis Karuhize Byarugaba, Phionah Tushabe, Sarah Kiguli, Prossy Namuwulya, Samuel S Malamba, Khuzwayo C Jere, Ulrich Desselberger, Miren Iturriza-Gomara

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Josephine BwogiEPI Laboratory, Uganda Virus Research Institute, 51-59 Nakiwogo Road, Entebbe P.O. Box 49, Uganda.
Charles KaramagiDepartment of Paediatrics and Child Health, College of Health Sciences, Makerere University, Kampala P.O. Box 7062, Uganda.
Denis Karuhize ByarugabaDepartment of Microbiology, College of Veterinary Medicine and Biosecurity, Makerere University, Kampala P.O. Box 7062, Uganda.ORCID 0000-0002-4175-5659
Phionah TushabeEPI Laboratory, Uganda Virus Research Institute, 51-59 Nakiwogo Road, Entebbe P.O. Box 49, Uganda.ORCID 0000-0002-0729-5505
Sarah KiguliDepartment of Paediatrics and Child Health, College of Health Sciences, Makerere University, Kampala P.O. Box 7062, Uganda.
Prossy NamuwulyaEPI Laboratory, Uganda Virus Research Institute, 51-59 Nakiwogo Road, Entebbe P.O. Box 49, Uganda.
Samuel S MalambaNorthern Uganda Program on Health Sciences, c/o Uganda Virus Research Institute, 51-59 Nakiwogo Road, Entebbe P.O. Box 49, Uganda.ORCID 0000-0001-8087-8849
Khuzwayo C JereInstitute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool L69 3BX, UK.
Ulrich DesselbergerDepartment of Medicine, University of Cambridge, Cambridge CB2 1TN, UK.ORCID 0000-0003-0154-2410
Miren Iturriza-GomaraInstitute of Infection, Veterinary and Ecological Sciences, University of Liverpool, Liverpool L69 3BX, UK.ORCID 0000-0001-5816-6423
Makerere University · UGUganda Virus Research Institute · UGUniversity of Liverpool · GBUniversity of Cambridge · GB

Funding

Wellcome TrustWellcome Trust 087540
6 · The paper itself

Abstract

Rotavirus genotypes are species specific. However, interspecies transmission is reported to result in the emergence of new genotypes. A cross-sectional study of 242 households with 281 cattle, 418 goats, 438 pigs, and 258 humans in Uganda was undertaken between 2013 and 2014. The study aimed to determine the prevalence and genotypes of rotaviruses across co-habiting host species, as well as potential cross-species transmission. Rotavirus infection in humans and animals was determined using NSP3 targeted RT-PCR and ProSpecT Rotavirus ELISA tests, respectively. Genotyping of rotavirus-positive samples was by G- and P-genotype specific primers in nested RT-PCR assays while genotyping of VP4 and VP7 proteins for the non-typeable human positive sample was done by Sanger sequencing. Mixed effect logistic regression was used to determine the factors associated with rotavirus infection in animals. The prevalence of rotavirus was 4.1% (95% CI: 3.0-5.5%) among the domestic animals and 0.8% (95% CI: 0.4-1.5%) in humans. The genotypes in human samples were G9P[8] and P[4]. In animals, six G-genotypes, G3(2.5%), G8(10%), G9(10%), G11(26.8%), G10(35%), and G12(42.5%), and nine P-genotypes, P[1](2.4%), P[4](4.9%), P[5](7.3%), P[6](14.6%), P[7](7.3%), P[8](9.8%), P[9](9.8%), P[10](12.2%), and P[11](17.1%), were identified. Animals aged 2 to 18 months were less likely to have rotavirus infection in comparison with animals below 2 months of age. No inter-host species transmission was identified.

Indexed as

RotavirusRotavirus InfectionsAnimalsAnimals, DomesticAntigens, ViralCapsid ProteinsCattleCross-Sectional StudiesFecesGenotypeGoatsHumansPhylogenySwineUgandaAntigens, ViralCapsid Proteinsco-surveillancedomestic animalsepidemiologygenotypinginter-host species transmissionrotavirusUganda

Identifiers

PMID36992447
PMCPMC10052166
OpenAlexW4324097642

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.