Evidence map›Paper›PMID 36992373›Full record

ArticleViruses2023

Genomic Constellation of Human Rotavirus G8 Strains in Brazil over a 13-Year Period: Detection of the Novel Bovine-like G8P[8] Strains with the DS-1-like Backbone.

Roberta Salzone Medeiros, Yasmin França, Ellen Viana, Lais Sampaio de Azevedo, Raquel Guiducci, Daniel Ferreira de Lima Neto, Antonio Charlys da Costa, Adriana Luchs

Abstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Roberta Salzone MedeirosEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.
Yasmin FrançaEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.
Ellen VianaEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.
Lais Sampaio de AzevedoEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.
Raquel GuiducciEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.
Daniel Ferreira de Lima NetoGeneral Coordination of Public Health Laboratories, Department of Strategic Articulation in Epidemiology and Health Surveillance, Ministry of Health, Brasília 70068-900, Brazil.
Antonio Charlys da CostaMedical Parasitology Laboratory (LIM/46), São Paulo Tropical Medicine Institute, University of Sao Paulo, Sao Paulo 05403-000, Brazil.ORCID 0000-0001-5516-5177
Adriana LuchsEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, Sao Paulo 01246-902, Brazil.ORCID 0000-0003-4131-990X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rotavirus (RVA) G8 is frequently detected in animals, but only occasionally in humans. G8 strains, however, are frequently documented in nations in Africa. Recently, an increase in G8 detection was observed outside Africa. The aims of the study were to monitor G8 infections in the Brazilian human population between 2007 and 2020, undertake the full-genotype characterization of the four G8P[4], six G8P[6] and two G8P[8] RVA strains and conduct phylogenetic analysis in order to understand their genetic diversity and evolution. A total of 12,978 specimens were screened for RVA using ELISA, PAGE, RT-PCR and Sanger sequencing. G8 genotype represented 0.6% (15/2434) of the entirely RVA-positive samples. G8P[4] comprised 33.3% (5/15), G8P[6] 46.7% (7/15) and G8P[8] 20% (3/15). All G8 strains showed a short RNA pattern. All twelve selected G8 strains displayed a DS-1-like genetic backbone. The whole-genotype analysis on a DS-1-like backbone identified four different genotype-linage constellations. According to VP7 analysis, the Brazilian G8P[8] strains with the DS-1-like backbone strains were derived from cattle and clustered with newly DS-1-like G1/G3/G9/G8P[8] strains and G2P[4] strains. Brazilian IAL-R193/2017/G8P[8] belonged to a VP1/R2.XI lineage and were grouped with bovine-like G8P[8] strains with the DS-1-like backbone strains detected in Asia. Otherwise, the Brazilian IAL-R558/2017/G8P[8] possess a "Distinct" VP1/R2 lineage never previously described and grouped apart from any of the DS-1-like reference strains. Collectively, our findings suggest that the Brazilian bovine-like G8P[8] strains with the DS-1-like backbone strains are continuously evolving and likely reassorting with local RVA strains rather than directly relating to imports from Asia. The Brazilian G8P[6]-DS-1-like strains have been reassorted with nearby co-circulating American strains of the same DS-1 genotype constellation. However, phylogenetic analyses revealed that these strains have some genetic origin from Africa. Finally, rather than being African-born, Brazilian G8P[4]-DS-1-like strains were likely imported from Europe. None of the Brazilian G8 strains examined here exhibited signs of recent zoonotic reassortment. G8 strains continued to be found in Brazil according to their intermittent and localized pattern, thus, does not suggest that a potential emergence is taking place in the country. Our research demonstrates the diversity of G8 RVA strains in Brazil and adds to the understanding of G8P[4]/P[6]/P[8] RVA genetic diversity and evolution on a global scale.

Indexed as

RotavirusRotavirus InfectionsAnimalsBrazilCattleGenome, ViralGenomicsGenotypeHumansPhylogenyRNA, ViralRNA, Viralbovine–human reassortantsemergenceG8gastroenteritisgenomic analysisrotavirus A

Identifiers

PMID36992373
PMCPMC10056101

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.