Evidence map›Paper›PMID 36992354›Full record

ArticleViruses2023

Genetic Diversity of Norovirus in Children with Acute Gastroenteritis in Southwest Nigeria, 2015-2017.

Kafayat O Arowolo, Christianah I Ayolabi, Isaac A Adeleye, Bruna A Lapinski, Jucelia S Santos, Sonia M Raboni

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 1 synthesis or guideline pooled it, 4 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Kafayat O ArowoloDepartment of Microbiology, University of Lagos, Lagos 100213, Nigeria.ORCID 0000-0001-7972-3284
Christianah I AyolabiDepartment of Microbiology, University of Lagos, Lagos 100213, Nigeria.
Isaac A AdeleyeDepartment of Microbiology, University of Lagos, Lagos 100213, Nigeria.
Bruna A LapinskiVirology Laboratory, Infectious Diseases Division, Complexo Hospital de Clinicas, Universidade Federal do Paraná, Curitiba 80060-900, PR, Brazil.ORCID 0000-0001-6136-4527
Jucelia S SantosVirology Laboratory, Infectious Diseases Division, Complexo Hospital de Clinicas, Universidade Federal do Paraná, Curitiba 80060-900, PR, Brazil.ORCID 0000-0002-5965-8160
Sonia M RaboniVirology Laboratory, Infectious Diseases Division, Complexo Hospital de Clinicas, Universidade Federal do Paraná, Curitiba 80060-900, PR, Brazil.ORCID 0000-0001-7907-7585
Hospital de Clínicas Universidade Federal do Paraná · BRUniversity of Lagos · NG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Norovirus (NoV) is a leading cause of viral gastroenteritis globally, especially in children below five years. Epidemiological studies on the diversity of NoV in middle- and low-income countries, including Nigeria, are limited. This study aimed to determine the genetic diversity of NoV in children below five years with acute gastroenteritis at three hospitals in Ogun State, Nigeria. A total of 331 fecal samples were collected from February 2015 to April 2017, while 175 were randomly selected and analyzed using RT-PCR, partial sequencing and phylogenetic analyses of both the polymerase (RdRp) and capsid (VP1) genes. NoV was detected in 5.1% (9/175; RdRp) and 2.3% (4/175; VP1) of samples, with 55.6% (5/9) co-infection with other enteric viruses. A diverse genotype distribution was identified, and GII.P4 was the dominant RdRp genotype detected (66.7%), with two genetic clusters, followed by GII.P31 (22.2%). The rare GII.P30 genotype (11.1%) was detected at a low rate for the first time in Nigeria. Based on the VP1 gene, GII.4 was the dominant genotype (75%), with two variants, Sydney 2012 and possibly New Orleans 2009, co-circulating during the study. Interestingly, both intergenotypic, GII.12(P4) and GII.4 New Orleans(P31), and intra-genotypic, GII.4 Sydney(P4) and GII.4 New Orleans(P4), putative recombinant strains were observed. This finding suggests the first likely report of GII.4 New Orleans(P31) in Nigeria. In addition, GII.12(P4) was first described in Africa and globally in this study, to the best of our knowledge. This study provided insights into the genetic diversity of NoV circulating in Nigeria, which would be useful for ongoing and future vaccine design and monitoring of emerging genotypes and recombinant strains.

Indexed as

Caliciviridae InfectionsGastroenteritisNorovirusChildFecesGenetic VariationGenotypeHumansInfantMolecular EpidemiologyNigeriaPhylogenyRNA-Dependent RNA PolymeraseRNA-Dependent RNA Polymeraseacute gastroenteritisgenetic diversitynorovirusrecombinant strain

Identifiers

PMID36992354
PMCPMC10056664
OpenAlexW4322631167

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.