Evidence map›Paper›PMID 36992353›Full record

ArticleViruses2023

Human Genome Polymorphisms and Computational Intelligence Approach Revealed a Complex Genomic Signature for COVID-19 Severity in Brazilian Patients.

André Filipe Pastor, Cássia Docena, Antônio Mauro Rezende, Flávio Rosendo da Silva Oliveira, Marília de Albuquerque Sena, Clarice Neuenschwander Lins de Morais, Cristiane Campello Bresani-Salvi, Luydson Richardson Silva Vasconcelos, Kennya Danielle Campelo Valença, Carolline de Araújo Mariz and 6 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

André Filipe PastorSertão Pernambucano Federal Institute of Education, Science and Technology, Petrolina 56316-686, PE, Brazil.
Cássia DocenaCore Facility, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Antônio Mauro RezendeDepartment of Microbiology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0003-4775-1779
Flávio Rosendo da Silva OliveiraFederal Institute of Education, Science and Technology of Pernambuco, Recife 50740-545, PE, Brazil.
Marília de Albuquerque SenaDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0003-2802-2140
Clarice Neuenschwander Lins de MoraisDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Cristiane Campello Bresani-SalviDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0002-1295-0885
Luydson Richardson Silva VasconcelosDepartment of Parasitology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Kennya Danielle Campelo ValençaDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Carolline de Araújo MarizDepartment of Parasitology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Carlos BritoDepartment of Clinical Medicine, Pernambuco Federal University, Recife 50740-600, PE, Brazil.
Cláudio Duarte FonsecaServidores do Estado Hospital (HSE), Recife 52020-020, PE, Brazil.
Cynthia BragaDepartment of Parasitology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0002-7862-6455
Christian Robson de Souza ReisDepartment of Microbiology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.
Ernesto Torres de Azevedo MarquesDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0003-3826-9358
Bartolomeu Acioli-SantosDepartment of Virology, Aggeu Magalhães Institute, Oswaldo Cruz Foundation, Recife 50740-465, PE, Brazil.ORCID 0000-0002-4994-0648
Fundação Oswaldo Cruz · BRHospital Federal dos Servidores do Estado · BRInstituto Federal de Educação, Ciência e Tecnologia de Pernambuco · BRInstituto Federal do Sertão Pernambucano · BRUniversidade Federal de Pernambuco · BRUniversity of Pittsburgh · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We present a genome polymorphisms/machine learning approach for severe COVID-19 prognosis. Ninety-six Brazilian severe COVID-19 patients and controls were genotyped for 296 innate immunity loci. Our model used a feature selection algorithm, namely recursive feature elimination coupled with a support vector machine, to find the optimal loci classification subset, followed by a support vector machine with the linear kernel (SVM-LK) to classify patients into the severe COVID-19 group. The best features that were selected by the SVM-RFE method included 12 SNPs in 12 genes:

Indexed as

COVID-19Genome, HumanAlgorithmsArtificial IntelligenceB7-H1 AntigenBrazilGenomicsHumansInterferon-Induced Helicase, IFIH1B7-H1 AntigenInterferon-Induced Helicase, IFIH1complex genomic classifierCOVID-19 geneticsmachine learningSARS-CoV-2 infection

Identifiers

PMID36992353
PMCPMC10059592
OpenAlexW4322619883

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.