Evidence map›Paper›PMID 36992133›Full record

ArticleVaccines2023

Assessment of GO-Based Protein Interaction Affinities in the Large-Scale Human-Coronavirus Family Interactome.

Soumyendu Sekhar Bandyopadhyay, Anup Kumar Halder, Sovan Saha, Piyali Chatterjee, Mita Nasipuri, Subhadip Basu

Abstract read
In one paragraph

Article in Vaccines, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Soumyendu Sekhar BandyopadhyayDepartment of Computer Science and Engineering, Jadavpur University, Kolkata 700032, India.ORCID 0000-0003-3530-2503
Anup Kumar HalderFaculty of Mathematics and Information Sciences, Warsaw University of Technology, 00-662 Warsaw, Poland.ORCID 0000-0003-4825-1901
Sovan SahaDepartment of Computer Science and Engineering (Artificial Intelligence and Machine Learning), Techno Main Salt Lake, Sector V, Kolkata 700091, India.ORCID 0000-0001-9251-8656
Piyali ChatterjeeDepartment of Computer Science and Engineering, Netaji Subhash Engineering College, Kolkata 700152, India.
Mita NasipuriDepartment of Computer Science and Engineering, Jadavpur University, Kolkata 700032, India.
Subhadip BasuDepartment of Computer Science and Engineering, Jadavpur University, Kolkata 700032, India.ORCID 0000-0003-1780-0461

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

SARS-CoV-2 is a novel coronavirus that replicates itself via interacting with the host proteins. As a result, identifying virus and host protein-protein interactions could help researchers better understand the virus disease transmission behavior and identify possible COVID-19 drugs. The International Committee on Virus Taxonomy has determined that nCoV is genetically 89% compared to the SARS-CoV epidemic in 2003. This paper focuses on assessing the host-pathogen protein interaction affinity of the coronavirus family, having 44 different variants. In light of these considerations, a GO-semantic scoring function is provided based on Gene Ontology (GO) graphs for determining the binding affinity of any two proteins at the organism level. Based on the availability of the GO annotation of the proteins, 11 viral variants,

Indexed as

COVID-19COVID-19 drugsCOVID-19 variantsgene ontologygo-semantic scoreprotein–protein interaction networkSARS-CoV-2

Identifiers

PMID36992133
PMCPMC10059867

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.