Evidence map›Paper›PMID 36990396›Full record

ArticleVirus research2023

Genetic diversity and epidemic histories of rice yellow mottle virus in Ghana.

Emmanuel Gilbert Omiat, Maxwell Darko Asante, Valentin Stanislas Edgar Traoré, Allen Oppong, Beatrice Elohor Ifie, Kirpal Agyemang Ofosu, Jamel Aribi, Agnès Pinel-Galzi, Aurore Comte, Denis Fargette and 5 more

Abstract read
In one paragraph

Article in Virus research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Emmanuel Gilbert OmiatWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, PMB 30, Legon, Accra, Ghana; National Agricultural Research Organisation (NARO), Buginyanya Zonal Agricultural Research and Development Institute, P. O. Box 1356, Mbale, Uganda.
Maxwell Darko AsanteCouncil for Scientific and Industrial Research - Crops Research Institute (CSIR- CRI), Fumesua, P. O. Box 3785, Kumasi, Ghana; Department of Plant Resources Development, CSIR College of Science and Technology, Fumesua, Kumasi, Ghana.
Valentin Stanislas Edgar TraoréINERA, LNB, Ouagadougou, Burkina Faso.
Allen OppongCouncil for Scientific and Industrial Research - Crops Research Institute (CSIR- CRI), Fumesua, P. O. Box 3785, Kumasi, Ghana.
Beatrice Elohor IfieWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, PMB 30, Legon, Accra, Ghana.
Kirpal Agyemang OfosuCouncil for Scientific and Industrial Research - Crops Research Institute (CSIR- CRI), Fumesua, P. O. Box 3785, Kumasi, Ghana.
Jamel AribiPHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France.
Agnès Pinel-GalziPHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France.
Aurore ComtePHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France.
Denis FargettePHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France.
Eugénie HébrardPHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France.
Oumar TraoréINERA, LNB, Ouagadougou, Burkina Faso.
Samuel Kwame OffeiWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, PMB 30, Legon, Accra, Ghana.
Eric Yirenkyi DanquahWest Africa Centre for Crop Improvement (WACCI), College of Basic and Applied Sciences, University of Ghana, PMB 30, Legon, Accra, Ghana.
Nils PoulicardPHIM, Université Montpellier, IRD, INRAE, Cirad, Institut Agro, Montpellier, France. Electronic address: nils.poulicard@ird.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice yellow mottle virus (RYMV) has persisted as a major biotic constraint to rice production in Africa. However, no data on RYMV epidemics were available in Ghana, although it is an intensive rice-producing country. Surveys were performed from 2010 to 2020 in eleven rice-growing regions of Ghana. Symptom observations and serological detections confirmed that RYMV is circulating in most of these regions. Coat protein gene and complete genome sequencings revealed that RYMV in Ghana almost exclusively belongs to the strain S2, one of the strains covering the largest area in West Africa. We also detected the presence of the S1ca strain which is being reported for the first time outside its area of origin. These results suggested a complex epidemiological history of RYMV in Ghana and a recent expansion of S1ca to West Africa. Phylogeographic analyses reconstructed at least five independent RYMV introductions in Ghana for the last 40 years, probably due to rice cultivation intensification in West Africa leading to a better circulation of RYMV. In addition to identifying some routes of RYMV dispersion in Ghana, this study contributes to the epidemiological surveillance of RYMV and helps to design disease management strategies, especially through breeding for rice disease resistance.

Indexed as

OryzaPlant VirusesGenetic VariationGhanaPlant BreedingEpidemiological surveillancePhylogeographySolemoviridaeSpatio-temporal dynamics

Identifiers

PMID36990396
PMCPMC10194323

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.