Evidence map›Paper›PMID 36987873›Full record

ArticleNucleic acids research2023

HPr prevents FruR-mediated facilitation of RNA polymerase binding to the fru promoter in Vibrio cholerae.

Chang-Kyu Yoon, Seung-Hwan Lee, Jing Zhang, Hye-Young Lee, Min-Kyu Kim, Yeong-Jae Seok

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In one paragraph

Article in Nucleic acids research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 2 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chang-Kyu YoonSchool of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Korea.ORCID 0000-0002-1546-9181
Seung-Hwan LeeSchool of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Korea.
Jing ZhangAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup, 56212, Korea.
Hye-Young LeeSchool of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Korea.
Min-Kyu KimAdvanced Radiation Technology Institute, Korea Atomic Energy Research Institute, Jeongeup, 56212, Korea.ORCID 0000-0001-9594-1396
Yeong-Jae SeokSchool of Biological Sciences and Institute of Microbiology, Seoul National University, Seoul, 08826, Korea.ORCID 0000-0003-0379-3619
Seoul National University · KRKorea Atomic Energy Research Institute · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phosphorylation state-dependent interactions of the phosphoenolpyruvate (PEP):carbohydrate phosphotransferase system (PTS) components with transcription factors play a key role in carbon catabolite repression (CCR) by glucose in bacteria. Glucose inhibits the PTS-dependent transport of fructose and is preferred over fructose in Vibrio cholerae, but the mechanism is unknown. We have recently shown that, contrary to Escherichia coli, the fructose-dependent transcriptional regulator FruR acts as an activator of the fru operon in V. cholerae and binding of the FruR-fructose 1-phosphate (F1P) complex to an operator facilitates RNA polymerase (RNAP) binding to the fru promoter. Here we show that, in the presence of glucose, dephosphorylated HPr, a general PTS component, binds to FruR. Whereas HPr does not affect DNA-binding affinity of FruR, regardless of the presence of F1P, it prevents the FruR-F1P complex from facilitating the binding of RNAP to the fru promoter. Structural and biochemical analyses of the FruR-HPr complex identify key residues responsible for the V. cholerae-specific FruR-HPr interaction not observed in E. coli. Finally, we reveal how the dephosphorylated HPr interacts with FruR in V. cholerae, whereas the phosphorylated HPr binds to CcpA, which is a global regulator of CCR in Bacillus subtilis and shows structural similarity to FruR.

Indexed as

Bacterial ProteinsRepressor ProteinsVibrio choleraeDNA-Directed RNA PolymerasesEscherichia coliFructoseGene Expression Regulation, BacterialGlucoseLac RepressorsOperonPhosphorylationBacterial ProteinsDNA-Directed RNA PolymerasesFructoseFruR protein, BacteriaGlucoseLac RepressorsRepressor Proteins

Identifiers

PMID36987873
PMCPMC10287919
OpenAlexW4361267618

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.