Evidence map›Paper›PMID 36985245›Full record

ArticleMicroorganisms2023

A New Perspective for Vineyard Terroir Identity: Looking for Microbial Indicator Species by Long Read Nanopore Sequencing.

Ana Cruz-Silva, Gonçalo Laureano, Marcelo Pereira, Ricardo Dias, José Moreira da Silva, Nuno Oliveira, Catarina Gouveia, Cristina Cruz, Margarida Gama-Carvalho, Fiammetta Alagna and 2 more

Abstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Frontiers in microbiology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Ana Cruz-SilvaBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0003-0749-0877
Gonçalo LaureanoBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0002-6508-1919
Marcelo PereiraBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0002-1424-9275
Ricardo DiasBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.
José Moreira da SilvaQuinta dos Murças, Esporão Company, Covelinhas, 5050-011 Peso da Régua, Portugal.
Nuno OliveiraNBI-Natural Business Intelligence, Regia Douro Park, 5000-033 Vila Real, Portugal.
Catarina GouveiaBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.
Cristina CruzDepartamento de Biologia Vegetal, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.ORCID 0000-0003-3100-463X
Margarida Gama-CarvalhoBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0002-0365-6916
Fiammetta AlagnaEnergy Technologies and Renewable Sources Department, National Agency for New Technologies, Energy and Sustainable Economic Development (ENEA), Trisaia Research Centre, 75026 Rotondella, MT, Italy.ORCID 0000-0003-1878-2023
Bernardo DuarteDepartamento de Biologia Vegetal, Faculdade de Ciências da Universidade de Lisboa, Campo Grande, 1749-016 Lisboa, Portugal.ORCID 0000-0003-1914-7435
Andreia FigueiredoBiosystems & Integrative Sciences Institute (BioISI), Faculdade de Ciências da Universidade de Lisboa, 1749-016 Lisboa, Portugal.ORCID 0000-0001-8156-7700

Funding

Fundação para a Ciência e Tecnologia UIDB/04292/2020, UIDP/04292/2020,LA/P/0069/2020,UIDP/04046/2020, CEEC-IND/00511/2017, UI/BD/153050/2022, SFRH/BD/145298/2019, PRIMA/0011/2020
6 · The paper itself

Abstract

Grapevine is one of the most important fruit crops worldwide, being Portugal one of the top wine producers. It is well established that wine sensory characteristics from a particular region are defined by the physiological responses of the grapevine to its environment and thus, the concept of terroir in viticulture was established. Among all the factors that contribute to terroir definition, soil microorganisms play a major role from nutrient recycling to a drastic influence on plant fitness (growth and protection) and of course wine production. Soil microbiome from four different terroirs in Quinta dos Murças vineyard was analysed through long-read Oxford Nanopore sequencing. We have developed an analytical pipeline that allows the identification of function, ecologies, and indicator species based on long read sequencing data. The Douro vineyard was used as a case study, and we were able to establish microbiome signatures of each terroir.

Indexed as

grapevinelong-read nanopore sequencingmicrobial signaturemicrobiomesoil metagenomic

Identifiers

PMID36985245
PMCPMC10054463

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.