Evidence map›Paper›PMID 36982699›Full record

ArticleInternational journal of molecular sciences2023

Transcriptome Analysis of Diffuse Large B-Cell Lymphoma Cells Inducibly Expressing MyD88 L265P Mutation Identifies Upregulated CD44, LGALS3, NFKBIZ, and BATF as Downstream Targets of Oncogenic NF-κB Signaling.

Marcello Turi, Anjana Anilkumar Sithara, Lucie Hofmanová, David Žihala, Dhwani Radhakrishnan, Alexander Vdovin, Sofija Knápková, Tereza Ševčíková, Zuzana Chyra, Tomáš Jelínek and 5 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.8field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 3 countries.

Marcello TuriFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.ORCID 0000-0002-8760-1794
Anjana Anilkumar SitharaFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.
Lucie HofmanováDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.
David ŽihalaFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.
Dhwani RadhakrishnanFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.ORCID 0000-0002-9830-6635
Alexander VdovinFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.
Sofija KnápkováFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.
Tereza ŠevčíkováFaculty of Science, University of Ostrava, 70100 Ostrava, Czech Republic.
Zuzana ChyraDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.ORCID 0000-0003-4807-2532
Tomáš JelínekDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.ORCID 0000-0002-5467-9253
Michal ŠimíčekDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.ORCID 0000-0003-2388-2723
Annamaria GullàCandiolo Cancer Institute, FPO-IRCCS, 10060 Candiolo, Italy.
Kenneth Carl AndersonJerome Lipper Multiple Myeloma Center, LeBow Institute for Myeloma Therapeutics, Dana-Farber Cancer Institute, Boston, MA 02215, USA.
Roman HájekDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.
Matouš HrdinkaDepartment of Haematooncology, Faculty of Medicine, University of Ostrava, 70300 Ostrava, Czech Republic.ORCID 0000-0002-2981-2825
University of Ostrava · CZHarvard University · US

Funding

American Society of Hematology N.A.Czech Science Foundation GA CR 18-24070YEuropean Regional Development Fund CZ.02.1.01/0.0/0.0/17_049/0008440Interní grantová soutěž pro studenty doktorského studia na Ostravské univerzitě CZ.02.2.69/0.0/0.0/19_073/0016939Italian Association for Cancer Research 27750Leukemia & Lymphoma Society N.A.Ministry of Education, Youth and Sports of the Czech Republic e-INFRA CZ ID:90140Ministry of Health, Czech Republic - conceptual development of research organization (FNOs/2022) CZ-DRO-FNOs/2022Podpora vědy a výzkumu v Moravskoslezském kraji 2021 N.A.
6 · The paper itself

Abstract

During innate immune responses, myeloid differentiation primary response 88 (MyD88) functions as a critical signaling adaptor protein integrating stimuli from toll-like receptors (TLR) and the interleukin-1 receptor (IL-1R) family and translates them into specific cellular outcomes. In B cells, somatic mutations in MyD88 trigger oncogenic NF-κB signaling independent of receptor stimulation, which leads to the development of B-cell malignancies. However, the exact molecular mechanisms and downstream signaling targets remain unresolved. We established an inducible system to introduce MyD88 to lymphoma cell lines and performed transcriptomic analysis (RNA-seq) to identify genes differentially expressed by MyD88 bearing the L265P oncogenic mutation. We show that MyD88

Indexed as

Lymphoma, Large B-Cell, DiffuseNF-kappa BAdaptor Proteins, Signal TransducingBasic-Leucine Zipper Transcription FactorsGalectin 3Gene Expression ProfilingHumansHyaluronan ReceptorsMutationMyeloid Differentiation Factor 88Adaptor Proteins, Signal TransducingBasic-Leucine Zipper Transcription FactorsBATF protein, humanCD44 protein, humanGalectin 3Hyaluronan ReceptorsMyeloid Differentiation Factor 88NF-kappa BNFKBIZ protein, humanCD44DLBCLGalectin-3LGALS3lymphomaMYD88NF-kBoncogenic signaling

Identifiers

PMID36982699
PMCPMC10057398
OpenAlexW4327619288

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.