Evidence map›Paper›PMID 36982433›Full record

ArticleInternational journal of molecular sciences2023

Analysis of the Electron Density of a Water Molecule Encapsulated by Two Cholic Acid Residues.

María Pilar Vázquez-Tato, Julio A Seijas, Francisco Meijide, Santiago de Frutos, José Vázquez Tato

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In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 1 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

María Pilar Vázquez-TatoDepartamento de Química Orgánica, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus Terra, 27080 Lugo, Spain.ORCID 0000-0003-3254-710X
Julio A SeijasDepartamento de Química Orgánica, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus Terra, 27080 Lugo, Spain.ORCID 0000-0002-5201-8873
Francisco MeijideDepartamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus Terra, 27080 Lugo, Spain.
Santiago de FrutosDepartamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus Terra, 27080 Lugo, Spain.
José Vázquez TatoDepartamento de Química Física, Facultade de Ciencias, Universidade de Santiago de Compostela, Campus Terra, 27080 Lugo, Spain.
Universidade de Santiago de Compostela · ES

Funding

Ministerio de Ciencia y Tecnología, Spain Project MAT201786109P
6 · The paper itself

Abstract

Cholic acid is a trihydroxy bile acid with a nice peculiarity: the average distance between the oxygen atoms (O7 and O12) of the hydroxy groups located at C7 and C12 carbon atoms is 4.5 Å, a value which perfectly matches with the O/O tetrahedral edge distance in Ih ice. In the solid phase, they are involved in the formation of hydrogen bonds with other cholic acid units and solvents. This fact was satisfactorily used for designing a cholic dimer which encapsulates one single water molecule between two cholic residues, its oxygen atom (Ow) being exactly located at the centroid of a distorted tetrahedron formed by the four steroid hydroxy groups. The water molecule participates in four hydrogen bonds, with the water simultaneously being an acceptor from the 2 O12 (hydrogen lengths are 2.177 Å and 2.114 Å) and a donor towards the 2 O7 (hydrogen bond lengths are 1.866 Å and 1.920 Å). These facts suggest that this system can be a nice model for the theoretical study of the formation of ice-like structures. These are frequently proposed to describe the water structure found in a plethora of systems (water interfaces, metal complexes, solubilized hydrophobic species, proteins, and confined carbon nanotubes). The above tetrahedral structure is proposed as a reference model for those systems, and the results obtained from the application of the atoms in molecules theory are presented here. Furthermore, the structure of the whole system allows a division into two interesting subsystems in which water is the acceptor of one hydrogen bond and the donor of another. The analysis of the calculated electron density is performed through its gradient vector and the Laplacian. The calculation of the complexation energy used correction of the basis set superposition error (BSSE) with the counterpoise method. As expected, four critical points located in the H…O bond paths were identified. All calculated parameters obey the proposed criteria for hydrogen bonds. The total energy for the interaction in the tetrahedral structure is 54.29 kJ/mol, while the summation obtained of the two independent subsystems and the one between the alkyl rings without water is only 2.5 kJ/mol higher. This concordance, together with the calculated values for the electron density, the Laplacian of the electron density, and the lengths of the oxygen atom and the hydrogen atom (involved in the formation of each hydrogen bond) to the hydrogen bond critical point, suggests that each pair of hydrogen bonds can be considered independent of each other.

Indexed as

Nanotubes, CarbonWaterCholic AcidElectronsHydrogenHydrogen BondingIceOxygenCholic AcidHydrogenIceNanotubes, CarbonOxygenWateratoms in molecules theorybile acidcholic acidcritical pointselectronic densityhydrogen bond

Identifiers

PMID36982433
PMCPMC10048964
OpenAlexW4324059090

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.