Evidence map›Paper›PMID 36982225›Full record

ArticleInternational journal of molecular sciences2023

Theoretical Study of Hydroxylation of α- and β-Pinene by a Cytochrome P450 Monooxygenase Model.

Janah Shaya, Lujain Aloum, Chung-Shin Lu, Peter R Corridon, Abdulrahman Aoudi, Abeer Shunnar, Eman Alefishat, Georg Petroianu

Open access · goldFull text read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.3field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 3 countries.

Janah ShayaDepartment of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0002-5099-183X
Lujain AloumDepartment of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0002-0641-8462
Chung-Shin LuDepartment of General Education, National Taichung University of Science and Technology, Taichung 404, Taiwan, China.
Peter R CorridonDepartment of Immunology and Physiology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0002-6796-4301
Abdulrahman AoudiDepartment of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0003-2194-5479
Abeer ShunnarDepartment of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.
Eman AlefishatDepartment of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0003-4584-9166
Georg PetroianuDepartment of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates.ORCID 0000-0001-9110-4750
Khalifa University of Science and Technology · AENational Taichung University of Science and Technology · TWUniversity of Jordan · JO

Funding

Khalifa University of Science and Technology Internal Funding
6 · The paper itself

Abstract

Previous studies on biocatalytic transformations of pinenes by cytochrome P450 (CYP) enzymes reveal the formation of different oxygenated products from a single substrate due to the multistate reactivity of CYP and the many reactive sites in the pinene scaffold. Up until now, the detailed mechanism of these biocatalytic transformations of pinenes have not been reported. Hereby, we report a systematic theoretical study of the plausible hydrogen abstraction and hydroxylation reactions of α- and β-pinenes by CYP using the density functional theory (DFT) method. All DFT calculations in this study were based on B3LYP/LAN computational methodology using the Gaussian09 software. We used the B3LYP functional with corrections for dispersive forces, BSSE, and anharmonicity to study the mechanism and thermodynamic properties of these reactions using a bare model (without CYP) and a pinene-CYP model. According to the potential energy surface and Boltzmann distribution for radical conformers, the major reaction products of CYP-catalyzed hydrogen abstraction from β-pinene are the doublet trans (53.4%) and doublet cis (46.1%) radical conformer at delta site. The formation of doublet cis/trans hydroxylated products released a total Gibbs free energy of about 48 kcal/mol. As for alpha pinene, the most stable radicals were trans-doublet (86.4%) and cis-doublet (13.6%) at epsilon sites, and their hydroxylation products released a total of ~50 kcal/mol Gibbs free energy. Our results highlight the likely C-H abstraction and oxygen rebounding sites accounting for the multi-state of CYP (doublet, quartet, and sextet spin states) and the formation of different conformers due to the presence of cis/trans allylic hydrogen in α-pinene and β-pinene molecules.

Indexed as

Cytochrome P-450 Enzyme SystemModels, TheoreticalBicyclic MonoterpenesHydrogenHydroxylationalpha-pinenebeta-pineneBicyclic MonoterpenesCytochrome P-450 Enzyme SystemHydrogencatalysisCYPDFThydroxylationmodellingpinene

Identifiers

PMID36982225
PMCPMC10048887
OpenAlexW4323568493

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.