Evidence map›Paper›PMID 36980587›Full record

ArticleCancers2023

Differential Spatial Gene and Protein Expression Associated with Recurrence Following Chemoradiation for Localized Anal Squamous Cell Cancer.

Sharia Hernandez, Prajnan Das, Emma B Holliday, Li Shen, Wei Lu, Benny Johnson, Craig A Messick, Cullen M Taniguchi, John Skibber, Ethan B Ludmir and 15 more

Open access · goldFull text read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 2 institutions in 1 country.

Sharia HernandezTranslational Molecular Pathology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Prajnan DasGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Emma B HollidayGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Li ShenBioinformatics, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0001-8427-9448
Wei LuTranslational Molecular Pathology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Benny JohnsonGastrointestinal Medical Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Craig A MessickColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Cullen M TaniguchiGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0002-8052-3316
John SkibberColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Ethan B LudmirGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0002-5472-5344
Y Nancy YouColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Grace Li SmithGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Brian BednarskiColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Larisa KostousovTranslational Molecular Pathology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Eugene J KoayGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0001-7675-3461
Bruce D MinskyGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Matthew TillmanColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Shaelynn PortierGastrointestinal Medical Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Cathy EngVanderbilt-Ingram Cancer Center, Nashville, TN 37232, USA.
Albert C KoongGastrointestinal Radiation Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
George J ChangColon and Rectal Surgery, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Wai Chin FooPathology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Jing WangBioinformatics, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
Luisa Solis SotoTranslational Molecular Pathology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.ORCID 0000-0002-1253-630X
Van K MorrisGastrointestinal Medical Oncology, The University of Texas-MD Anderson Cancer Center, Houston, TX 77030, USA.
The University of Texas MD Anderson Cancer Center · USVanderbilt University · US

Funding

Paul Calabresi Clinical Oncology AwardK12CA088084 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI David S. Hong, Scott Kopetz · 2000 to 2026
$14.0M
NCI NIH HHS K12 CA088084NIH HHS K12 CA088084
6 · The paper itself

Abstract

The identification of transcriptomic and protein biomarkers prognosticating recurrence risk after chemoradiation of localized squamous cell carcinoma of the anus (SCCA) has been limited by a lack of available fresh tissue at initial presentation. We analyzed archival FFPE SCCA specimens from pretreatment biopsies prior to chemoradiation for protein and RNA biomarkers from patients with localized SCCA who recurred (N = 23) and who did not recur (N = 25). Tumor cells and the tumor microenvironment (TME) were analyzed separately to identify biomarkers with significantly different expression between the recurrent and non-recurrent groups. Recurrent patients had higher mean protein expression of FoxP3, MAPK-activation markers (BRAF, p38-MAPK) and PI3K/Akt activation (phospho-Akt) within the tumor regions. The TME was characterized by the higher protein expression of immune checkpoint biomarkers such as PD-1, OX40L and LAG3. For patients with recurrent SCCA, the higher mean protein expression of fibronectin was observed in the tumor and TME compartments. No significant differences in RNA expression were observed. The higher baseline expression of immune checkpoint biomarkers, together with markers of MAPK and PI3K/Akt signaling, are associated with recurrence following chemoradiation for patients with localized SCCA. These data provide a rationale towards the application of immune-based therapeutic strategies to improve curative-intent outcomes beyond conventional therapies for patients with SCCA.

Indexed as

chemoradiationdigital spatial profilingprotein profilingrecurrencesquamous anal cell carcinoma

Identifiers

PMID36980587
PMCPMC10046657
OpenAlexW4323848651

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read1
measurements read18
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.