Evidence map›Paper›PMID 36980336›Full record

ArticleDiagnostics (Basel, Switzerland)2023

Developing Automated Computer Algorithms to Track Periodontal Disease Change from Longitudinal Electronic Dental Records.

Jay S Patel, Krishna Kumar, Ahad Zai, Daniel Shin, Lisa Willis, Thankam P Thyvalikakath

Open access · goldFull text read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 2 pooled it
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 2 syntheses or guidelines pooled it, 14 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jay S PatelDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.ORCID 0000-0003-0559-5958
Krishna KumarDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.
Ahad ZaiDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.
Daniel ShinDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.
Lisa WillisDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.
Thankam P ThyvalikakathDental Informatics, Department of Cariology Operative Dentistry and Dental Public Health, Indiana Univesity School of Dentistry, Indianapolis, IN 46202, USA.ORCID 0000-0002-7294-2318
Indiana University – Purdue University Indianapolis · USRegenstrief Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo develop two automated computer algorithms to extract information from clinical notes, and to generate three cohorts of patients (disease improvement, disease progression, and no disease change) to track periodontal disease (PD) change over time using longitudinal electronic dental records (EDR).

methodsWe conducted a retrospective study of 28,908 patients who received a comprehensive oral evaluation between 1 January 2009, and 31 December 2014, at Indiana University School of Dentistry (IUSD) clinics. We utilized various Python libraries, such as Pandas, TensorFlow, and PyTorch, and a natural language tool kit to develop and test computer algorithms. We tested the performance through a manual review process by generating a confusion matrix. We calculated precision, recall, sensitivity, specificity, and accuracy to evaluate the performances of the algorithms. Finally, we evaluated the density of longitudinal EDR data for the following follow-up times: (1) None; (2) Up to 5 years; (3) > 5 and ≤ 10 years; and (4) >10 and ≤ 15 years.

resultsThirty-four percent (

conclusionsThis study demonstrated the feasibility of utilizing longitudinal EDR data to track disease changes over 15 years during the observation study period. We provided detailed steps and computer algorithms to clean and preprocess the EDR data and generated three cohorts of patients. This information can now be utilized for studying clinical courses using artificial intelligence and machine learning methods.

Indexed as

clinical course of periodontal diseasedata qualitydental informaticselectronic dental recordlongitudinal dataperiodontal cohort generationperiodontal disease

Identifiers

PMID36980336
PMCPMC10047444
OpenAlexW4323569263

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read1
measurements read56
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.