Evidence map›Paper›PMID 36980232›Full record

ArticleCells2023

Heparanase Modulates Chromatin Accessibility.

Honglian Li, Hua Zhang, Amelie Wenz, Ziqi Kang, Helen Wang, Israel Vlodavsky, Xingqi Chen, Jinping Li

Open access · goldFull text read
In one paragraph

Article in Cells, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. The Pathophysiological Functions of Heparanases: From Evolution, Structural and Tissue-Specific Perspectives.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Review
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Honglian LiSciLifeLab Uppsala, The Biomedical Center, Department of Medical Biochemistry and Microbiology, University of Uppsala, 75237 Uppsala, Sweden.ORCID 0000-0002-5820-3121
Hua ZhangDepartment of Immunology, Genetic and Pathology, University of Uppsala, 75237 Uppsala, Sweden.
Amelie WenzDepartment of Immunology, Genetic and Pathology, University of Uppsala, 75237 Uppsala, Sweden.ORCID 0000-0003-1929-382X
Ziqi KangDepartment of Immunology, Genetic and Pathology, University of Uppsala, 75237 Uppsala, Sweden.
Helen WangSciLifeLab Uppsala, The Biomedical Center, Department of Medical Biochemistry and Microbiology, University of Uppsala, 75237 Uppsala, Sweden.
Israel VlodavskyTechnion Integrated Cancer Center (TICC), Rappaport, Faculty of Medicine, Technion, Haifa 31096, Israel.
Xingqi ChenDepartment of Immunology, Genetic and Pathology, University of Uppsala, 75237 Uppsala, Sweden.ORCID 0000-0002-5657-2839
Jinping LiSciLifeLab Uppsala, The Biomedical Center, Department of Medical Biochemistry and Microbiology, University of Uppsala, 75237 Uppsala, Sweden.
Uppsala University · SEScience for Life Laboratory · SETechnion – Israel Institute of Technology · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Heparanase is the sole endoglucuronidase that degrades heparan sulfate in the cell surface and extracellular matrix (ECM). Several studies have reported the localization of heparanase in the cell nucleus, but the functional role of the nuclear enzyme is still obscure. Subjecting mouse embryonic fibroblasts (MEFs) derived from heparanase knockout (Hpse-KO) mice and applying transposase-accessible chromatin with sequencing (ATAC-seq), we revealed that heparanase is involved in the regulation of chromatin accessibility. Integrating with genome-wide analysis of chromatin states revealed an overall low activity in the enhancer and promoter regions of Hpse-KO MEFs compared with wild-type (WT) MEFs. Western blot analysis of MEFs and tissues derived from Hpse-KO vs. WT mice confirmed reduced expression of H3K27ac (acetylated lysine at N-terminal position 27 of the histone H3 protein). Our results offer a mechanistic explanation for the well-documented attenuation of inflammatory responses and tumor growth in Hpse-KO mice.

Indexed as

ChromatinFibroblastsAnimalsGlucuronidaseHeparanaseHeparan SulfateMiceChromatinGlucuronidaseHeparanaseHeparan SulfateATAC-seqepigeneticsheparanasehistone

Identifiers

PMID36980232
PMCPMC10047235
OpenAlexW4324157365

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read16
table measurements read3
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.