Evidence map›Paper›PMID 36979852›Full record

ArticleBiomedicines2023

Bioinformatics-Based Analysis of Key Genes in Steroid-Induced Osteonecrosis of the Femoral Head That Are Associated with Copper Metabolism.

Baochuang Qi, Chuan Li, Xingbo Cai, Luqiao Pu, Minzheng Guo, Zhifang Tang, Pengfei Bu, Yongqing Xu

Open access · goldFull text read
In one paragraph

Article in Biomedicines, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.0field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Baochuang QiGraduate School, Kunming Medical University, No.1168, Chunrong West Road, Yuhua Street, Chenggong District, Kunming 650500, China.
Chuan LiGraduate School, Kunming Medical University, No.1168, Chunrong West Road, Yuhua Street, Chenggong District, Kunming 650500, China.
Xingbo CaiGraduate School, Kunming Medical University, No.1168, Chunrong West Road, Yuhua Street, Chenggong District, Kunming 650500, China.
Luqiao PuDepartment of Orthopaedics, 920th Hospital of the Joint Logistics Support Force of the Chinese People's Liberation Army, Kunming 650032, China.
Minzheng GuoGraduate School, Kunming Medical University, No.1168, Chunrong West Road, Yuhua Street, Chenggong District, Kunming 650500, China.
Zhifang TangMedical College, Dali University, Dali Bai Autonomous Prefecture, Dali 671003, China.
Pengfei BuDepartment of Orthopaedics, 920th Hospital of the Joint Logistics Support Force of the Chinese People's Liberation Army, Kunming 650032, China.
Yongqing XuDepartment of Orthopaedics, 920th Hospital of the Joint Logistics Support Force of the Chinese People's Liberation Army, Kunming 650032, China.
Kunming Medical University · CNChinese People's Liberation Army · CNDali University · CN

Funding

This work was supported by Yunnan Orthopaedic Trauma Clinical Medical Center ZX20191001Yunnan Orthopedics and Sports Rehabilitation Clinical Medicine Research Center No. 202102AA310068
6 · The paper itself

Abstract

Osteonecrosis of the femoral head (ONFH) is a common disabling disease. Copper has positive effects on cells that regulate bone metabolism. However, the relationship between copper metabolism (CM) and steroid-induced ONFH (SONFH) remains unclear. The GSE123568 dataset was downloaded from the Gene Expression Omnibus. The differentially expressed CM-related SONFH genes (DE-CMR-SONFHGs) were identified via differential analysis and weighted gene coexpression network analysis (WGCNA). Receiver operating characteristic (ROC) analysis was performed for the predictive accuracy of key genes. Targeting drugs and the copper death-related genes (CDRGs) relevant to key genes were investigated. The bioinformatics results were confirmed via quantitative real-time polymerase chain reaction (qRT-PCR) and Western blot (WB) analysis. Two out of 106 DE-CMR-SONFHGs were identified as key genes (PNP and SLC2A1), which had diagnostic value in distinguishing SONFH from control samples and were related to various immune cell infiltrations. Eleven PMP-targeting drugs and five SLC2A1-targeting drugs were identified. The qRT-PCR, as well as WB, results confirmed the downregulation PNP and SLC2A1 and high expression of the CDRGs DLD, PDHB, and MTF1, which are closely related to these two key genes. In conclusion, PNP and SLC2A1 were identified as key genes related to SONFH and may provide insights for SONFH treatment.

Indexed as

bioinformaticcopper metabolismgene expression omnibusquantitative real-time polymerase chain reactionsteroid-induced osteonecrosis of the femoral head

Identifiers

PMID36979852
PMCPMC10045807
OpenAlexW4324053786

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read12
table measurements read4
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.