Evidence map›Paper›PMID 36979375›Full record

ArticleBiomolecules2023

Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions.

Cristina Gómez-Martín, Hui Zhou, José María Medina, Ernesto Aparicio-Puerta, Bujun Shi, Michael Hackenberg

Open access · goldFull text read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 4 countries.

Cristina Gómez-MartínDepartment of Pathology, Cancer Center Amsterdam, Amsterdam UMC, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands.ORCID 0000-0003-0866-4103
Hui ZhouSchool of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA 5064, Australia.
José María MedinaComputational Genomics and Bioinformatics Group, Genetics Department, University of Granada, 18071 Granada, Spain.
Ernesto Aparicio-PuertaChair for Clinical Bioinformatics, Saarland University, 66123 Saarbrücken, Germany.
Bujun ShiSchool of Agriculture, Food and Wine, University of Adelaide, Urrbrae, SA 5064, Australia.
Michael HackenbergComputational Genomics and Bioinformatics Group, Genetics Department, University of Granada, 18071 Granada, Spain.ORCID 0000-0003-2248-3114
The University of Adelaide · AUUniversidad de Granada · ESAmsterdam University Medical Centers · NLSaarland University · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Wheat is one of the most important food sources on Earth. MicroRNAs (miRNAs) play important roles in wheat productivity. To identify wheat miRNAs as well as their expression profiles under drought condition, we constructed and sequenced small RNA (sRNA) libraries from the leaves and roots of three wheat cultivars (Kukri, RAC875 and Excalibur) under water and drought conditions. A total of 636 known miRNAs and 294 novel miRNAs were identified, of which 34 miRNAs were tissue- or cultivar-specific. Among these, 314 were significantly regulated under drought conditions. miRNAs that were drought-regulated in all cultivars displayed notably higher expression than those that responded in a cultivar-specific manner. Cultivar-specific drought response miRNAs were mainly detected in roots and showed significantly different drought regulations between cultivars. By using wheat degradome library, 6619 target genes were identified. Many target genes were strongly enriched for protein domains, such as MEKHLA, that play roles in drought response. Targeting analysis showed that drought-downregulated miRNAs targeted more genes than drought-upregulated miRNAs. Furthermore, such genes had more important functions. Additionally, the genes targeted by drought-downregulated miRNAs had multiple interactions with each other, while the genes targeted by drought-upregulated miRNAs had no interactions. Our data provide valuable information on wheat miRNA expression profiles and potential functions in different tissues, cultivars and drought conditions.

Indexed as

MicroRNAsWaterDroughtsGene Expression Regulation, PlantGene LibraryStress, PhysiologicalTriticumMicroRNAsWaterdifferential expressiondroughtExcaliburgenome conservationKukrimiRNA functionmiRNAsRAC875tissue-specificwheat

Identifiers

PMID36979375
PMCPMC10045996
OpenAlexW4322500658

What OpenQuestion holds

Textfull text, public
LicenceCC BY
reference markers read2
measurements read37
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.