Evidence map›Paper›PMID 36979356›Full record

ArticleBiomolecules2023

LC-MS/MS-Based Proteomics Approach for the Identification of Candidate Serum Biomarkers in Patients with Narcolepsy Type 1.

Akeem Sanni, Mona Goli, Jingfu Zhao, Junyao Wang, Chloe Barsa, Samer El Hayek, Farid Talih, Bartolo Lanuzza, Firas Kobeissy, Giuseppe Plazzi and 4 more

Open access · goldFull text read
In one paragraph

Article in Biomolecules, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. SerumBiomolecules · 2024
    Article
  5. SerumACS omega · 2024
    Article
  6. Article
  7. Article
  8. Human serum proteomics reveals a molecular signature after one night of sleep deprivation.Sleep advances : a journal of the Sleep Research Society · 2024
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 8 institutions in 3 countries.

Akeem SanniChemistry and Biochemistry Department, Texas Tech University, Lubbock, TX 79409, USA.ORCID 0000-0002-1250-7293
Mona GoliChemistry and Biochemistry Department, Texas Tech University, Lubbock, TX 79409, USA.
Jingfu ZhaoChemistry and Biochemistry Department, Texas Tech University, Lubbock, TX 79409, USA.
Junyao WangChemistry and Biochemistry Department, Texas Tech University, Lubbock, TX 79409, USA.ORCID 0000-0002-7614-5615
Chloe BarsaFaculty of Biochemistry and Molecular Genetics, American University of Beirut, Beirut 1107 2020, Lebanon.
Samer El HayekDepartment of Psychiatry and Behavioral Sciences, University of Miami Miller School of Medicine, Miami, FL 33124, USA.ORCID 0000-0002-7975-6104
Farid TalihDepartment of Psychiatry, Faculty of Medicine, American University of Beirut, Beirut 1107 2020, Lebanon.
Bartolo LanuzzaSleep Research Centre, Department of Neurology IC, Oasi Research Institute-IRCCS, 94018 Troina, Italy.
Firas KobeissyFaculty of Biochemistry and Molecular Genetics, American University of Beirut, Beirut 1107 2020, Lebanon.ORCID 0000-0002-5008-6944
Giuseppe PlazziIRCCS, Instituto delle Scienze Neurologiche di Bologna, 40139 Bologna, Italy.
Monica MorescoIRCCS, Instituto delle Scienze Neurologiche di Bologna, 40139 Bologna, Italy.
Stefania MondelloDepartment of Biomedical and Dental Sciences and Morphofunctional Imaging, University of Messina, 98122 Messina, Italy.ORCID 0000-0002-8587-3614
Raffaele FerriSleep Research Centre, Department of Neurology IC, Oasi Research Institute-IRCCS, 94018 Troina, Italy.ORCID 0000-0001-6937-3065
Yehia MechrefChemistry and Biochemistry Department, Texas Tech University, Lubbock, TX 79409, USA.ORCID 0000-0002-6661-6073
Texas Tech University · USAmerican University of Beirut · LBI.R.C.C.S. Oasi Maria SS · ITIstituto delle Scienze Neurologiche di Bologna · ITMorehouse School of Medicine · USUniversity of Messina · ITUniversity of Miami · USUniversity of Modena and Reggio Emilia · IT

Funding

Quantitative Characterization of Glycopeptide IsomersR01GM130091 · NIGMS · TEXAS TECH UNIVERSITY · PI Yehia Mechref · 2019 to 2026
$2.5M
NIGMS NIH HHS R01 GM130091NIH HHS 1R01GM130091-02NIH HHS 1R01GM130091-04
6 · The paper itself

Abstract

Narcolepsy type 1 (NT1) is the most common type of narcolepsy known to be caused by the loss of specific neurons responsible for producing peptide neurotransmitters (orexins/hypocretins), resulting in a sleep-wake cycle disorder. It is characterized by its association with cataplexy and abnormalities in rapid eye movement. To date, no cure has been established for this life-threatening condition. Misdiagnosis of NT1 is also quite common, although it is not exceedingly rare. Therefore, successfully identifying candidate serum biomarkers for NT1 would be a head start for accurate diagnosis and development of therapeutics for this disorder. This study aims to identify such potential serum biomarkers. A depletion protocol was employed for 27 human serum samples (16 NT1 and 11 healthy controls), followed by applying LC-MS/MS bottom-up proteomics analysis, then LC-PRM-MS for validation. The comparison of the proteome profiles of the low-abundant proteins in the samples was then investigated based on age, sex, sample groups, and the presence of the Human Leukocyte Antigen (HLA) DQB1*0602 allele. The results were tracked to gene expression studies as well as system biology to identify key proteins and understand their relationship in the pathogenesis of NT1. Our results revealed 36 proteins significantly and differentially expressed. Among the impaired pathways and bioprocesses, the complement activation pathway is impaired by six of the differentially expressed proteins (DEPs). They are coded by the genes C2, CFB, C5, C1R, C1S, and MASP1, while 11 DEPs are involved in Acute Phase Response Signaling (APRS), which are coded by the genes FN1, AMBP, APOH, CFB, CP, ITIH2, C5, C2, F2, C1, and ITIH4. The combined AUCs of the downregulated and upregulated DEPs are 0.95 and 0.76, respectively. Overall, this study reveals potential serum-protein biomarkers of NT1 and explains the possible correlation between the biomarkers and pathophysiological effects, as well as important biochemical pathways involved in NT1.

Indexed as

NarcolepsyProteomicsBiomarkersChromatography, LiquidHumansOrexinsTandem Mass SpectrometryBiomarkersOrexinsautoimmunityNT1orexin/hypocretinpathophysiologyserum-protein biomarkers

Identifiers

PMID36979356
PMCPMC10046664
OpenAlexW4321616860

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.