Evidence map›Paper›PMID 36978712›Full record

ArticleBioengineering (Basel, Switzerland)2023

Automated Quantification of Pneumonia Infected Volume in Lung CT Images: A Comparison with Subjective Assessment of Radiologists.

Seyedehnafiseh Mirniaharikandehei, Alireza Abdihamzehkolaei, Angel Choquehuanca, Marco Aedo, Wilmer Pacheco, Laura Estacio, Victor Cahui, Luis Huallpa, Kevin Quiñonez, Valeria Calderón and 7 more

Full text read
In one paragraph

Article in Bioengineering (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Seyedehnafiseh MirniaharikandeheiSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019-1102, USA.ORCID 0000-0002-1070-4517
Alireza AbdihamzehkolaeiSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019-1102, USA.
Angel ChoquehuancaSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Marco AedoSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.ORCID 0000-0001-6608-804X
Wilmer PachecoSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Laura EstacioSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Victor CahuiSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Luis HuallpaSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Kevin QuiñonezSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Valeria CalderónSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Ana Maria GutierrezSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Ana VargasMedical School, Universidad Nacional de San Agustín de Arequipa, Arequipa 04002, Peru.
Dery GameroMedical School, Universidad Nacional de San Agustín de Arequipa, Arequipa 04002, Peru.
Eveling Castro-GutierrezSchool of Systems Engineering and Informatics, Universidad Nacional de San Agustín de Arequipa, Arequipa 04000, Peru.
Yuchen QiuSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019-1102, USA.
Bin ZhengSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019-1102, USA.ORCID 0000-0002-7682-6648
Javier A JoSchool of Electrical and Computer Engineering, University of Oklahoma, Norman, OK 73019-1102, USA.

Funding

Use of 3D Quantitative Optical Methods to Optimize Mebendazole Treatment of Ovarian CancerP20GM135009 · NIGMS · UNIVERSITY OF OKLAHOMA · PI Yuye Ling · 2022 to 2026
$13.6M
Endogenous fluorescence lifetime endoscopy for early detection of oral cancer and dysplasiaR01CA218739 · NCI · UNIVERSITY OF OKLAHOMA · PI JO, JAVIER ANTONIO · 2018 to 2023
$2.5M
NCI NIH HHS R01 CA218739NIGMS NIH HHS P20 GM135009
6 · The paper itself

Abstract

objectiveTo help improve radiologists' efficacy of disease diagnosis in reading computed tomography (CT) images, this study aims to investigate the feasibility of applying a modified deep learning (DL) method as a new strategy to automatically segment disease-infected regions and predict disease severity.

methodsWe employed a public dataset acquired from 20 COVID-19 patients, which includes manually annotated lung and infections masks, to train a new ensembled DL model that combines five customized residual attention U-Net models to segment disease infected regions followed by a Feature Pyramid Network model to predict disease severity stage. To test the potential clinical utility of the new DL model, we conducted an observer comparison study. First, we collected another set of CT images acquired from 80 COVID-19 patients and process images using the new DL model. Second, we asked two chest radiologists to read images of each CT scan and report the estimated percentage of the disease-infected lung volume and disease severity level. Third, we also asked radiologists to rate acceptance of DL model-generated segmentation results using a 5-scale rating method.

resultsData analysis results show that agreement of disease severity classification between the DL model and radiologists is >90% in 45 testing cases. Furthermore, >73% of cases received a high rating score (≥4) from two radiologists.

conclusionThis study demonstrates the feasibility of developing a new DL model to automatically segment disease-infected regions and quantitatively predict disease severity, which may help avoid tedious effort and inter-reader variability in subjective assessment of disease severity in future clinical practice.

Indexed as

comparison between manual and automated image segmentationCOVID-19 detectionCOVID-19 severity assessmentdeep neural networkinfected lung segmentationquantification of lung disease severity

Identifiers

PMID36978712
PMCPMC10044796

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read21
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.