Evidence map›Paper›PMID 36978617›Full record

ArticleAnimals : an open access journal from MDPI2023

Transcriptomic Analysis Reveals mRNA and Alternative Splicing Events in Ovine Skeletal Muscle Satellite Cells during Proliferation and Differentiation.

Qian Chen, Chang Huang, Yinxiao Su, Qian Zhao, Yabin Pu, Xiaohong He, Lin Jiang, Yuehui Ma, Qianjun Zhao, Shaohui Ye

Open access · goldFull text read
In one paragraph

Article in Animals : an open access journal from MDPI, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qian ChenDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Chang HuangDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Yinxiao SuInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Qian ZhaoDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Yabin PuInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Xiaohong HeInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Lin JiangInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.ORCID 0000-0001-9123-5988
Yuehui MaInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.ORCID 0000-0001-9526-1454
Qianjun ZhaoInstitute of Animal Science, Chinese Academy of Agricultural Sciences (CAAS), Beijing 100193, China.
Shaohui YeDepartment of Animal Breeding and Reproduction, College of Animal Science and Technology, Yunnan Agricultural University, Kunming 650201, China.
Yunnan Agricultural University · CNChinese Academy of Agricultural Sciences · CN

Funding

Ministry of Agriculture and Rural Affairs 19221953National Natural Science Foundation of China 32172701
6 · The paper itself

Abstract

Skeletal muscle satellite cells (SMSCs), which are highly multifunctional muscle-derived stem cells, play an essential role in myogenesis and regeneration. Here, the transcriptional profile of SMSCs during proliferation and differentiation were constructed using the RNA-Seq method. A total of 1954 differentially expressed genes (DEGs) and 1092 differentially alternative splicing genes (DAGs) were identified including 1288 upregulated genes as well as 666 downregulated genes. GO and KEGG analyses showed that the DEGs and DAGs were enriched in the MAPK (mitogen-activated protein kinase) signaling pathway, the PI3K-Akt (phosphatidylinositol-tris-phosphate kinase 3/protein kinase B) signaling pathway, the Wnt signaling pathway, and the Ras signaling pathway. In total, 1479 alternative splice events (AS) were also identified during SMSC proliferation and differentiation. Among them, a unique AS event was the major per-mRNA splicing type, and SE was the predominant splicing pattern. Furthermore, transcription factors with AS were scanned during SMSC differentiation such as myocyte enhancer factor-2C (

Indexed as

alternative splicemRNAovine skeletal satellite celltranscription factor

Identifiers

PMID36978617
PMCPMC10044542
OpenAlexW4327737697

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read35
table measurements read13
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.