Evidence map›Paper›PMID 36976396›Full record

ArticlePlanta2023

The Arabidopsis Phytoglobin 2 mediates phytochrome B (phyB) light signaling responses during somatic embryogenesis.

Mohammed M Mira, Sam Day, Shimaa Ibrahim, Robert D Hill, Claudio Stasolla

Abstract read
PubMed Publisher
In one paragraph

Article in Planta, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. How does light regulate plant regeneration?Frontiers in plant science · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Mohammed M MiraDepartment of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Sam DayDepartment of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Shimaa IbrahimDepartment of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Robert D HillDepartment of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada.
Claudio StasollaDepartment of Plant Science, University of Manitoba, Winnipeg, MB, R3T 2N2, Canada. stasolla@ms.umanitoba.ca.
University of Manitoba · CATanta University · EG

Funding

NSERC 13245
6 · The paper itself

Abstract

MAIN

conclusionsDuring the light induction of somatic embryogenesis, phyB-Pfr suppresses Phytoglobin 2, known to elevate nitric oxide (NO). NO depresses Phytochrome Interacting Factor 4 (PIF4) relieving its inhibition on embryogenesis through auxin. An obligatory step of many in vitro embryogenic systems is the somatic-embryogenic transition culminating with the formation of the embryogenic tissue. In Arabidopsis, this transition requires light and is facilitated by high levels of nitric oxide (NO) generated by either suppression of the NO scavenger Phytoglobin 2 (Pgb2), or its removal from the nucleus. Using a previously characterized induction system regulating the cellular localization of Pgb2, we demonstrated the interplay between phytochrome B (phyB) and Pgb2 during the formation of embryogenic tissue. The deactivation of phyB in the dark coincides with the induction of Pgb2 known to reduce the level of NO; consequently, embryogenesis is inhibited. Under light conditions, the active form of phyB depresses the levels of Pgb2 transcripts, thus expecting an increase in cellular NO. Induction of Pgb2 increases Phytochrome Interacting Factor 4 (PIF4) suggesting that high levels of NO repress PIF4. The PIF4 inhibition is sufficient to induce several auxin biosynthetic (CYP79B2, AMI1, and YUCCA 1, 2, and 6) and response (ARF5, 8, and 16) genes, conducive to the formation of the embryonic tissue and production of somatic embryos. Auxin responses mediated by ARF10 and 17 appear to be regulated by Pgb2, possibly through NO, in a PIF4-independent fashion. Overall, this work provides a new and preliminary model integrating Pgb2 (and NO) with phyB in the light regulation of in vitro embryogenesis.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeGene Expression Regulation, PlantIndoleacetic AcidsLightNitric OxidePhytochrome BArabidopsis ProteinsIndoleacetic AcidsNitric OxidePHYB protein, ArabidopsisPhytochromePhytochrome BAuxinLight signalingNitric oxidePhytoglobinSomatic embryogenesis

Identifiers

PMID36976396
OpenAlexW4361214559

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.