Evidence map›Paper›PMID 36975217›Full record

ArticleDevelopment (Cambridge, England)2023

Next-generation plasmids for transgenesis in zebrafish and beyond.

Cassie L Kemmler, Hannah R Moran, Brooke F Murray, Aaron Scoresby, John R Klem, Rachel L Eckert, Elizabeth Lepovsky, Sylvain Bertho, Susan Nieuwenhuize, Sibylle Burger and 12 more

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Cp36 serine recombinase as a new tool for zebrafish transgenesis.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Developmental regulation of intestinalbioRxiv : the preprint server for biology · 2025
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The zebrafish (NAR genomics and bioinformatics · 2025
    Article
  14. Review
  15. Science advances · 2024
    Article
  16. Review
  17. Article
  18. bioRxiv : the preprint server for biology · 2023
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Cassie L KemmlerUniversity of Colorado, School of Medicine, Anschutz Medical Campus, Department of Pediatrics, Section of Developmental Biology, 12801 E 17th Avenue, Aurora, CO 80045, USA.ORCID 0000-0002-4516-029X
Hannah R MoranUniversity of Colorado, School of Medicine, Anschutz Medical Campus, Department of Pediatrics, Section of Developmental Biology, 12801 E 17th Avenue, Aurora, CO 80045, USA.ORCID 0000-0001-8056-5762
Brooke F MurrayDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0002-1351-3572
Aaron ScoresbyDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.
John R KlemDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Rachel L EckertDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Elizabeth LepovskyDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.
Sylvain BerthoStowers Institute for Medical Research, Kansas City, MO 64110, USA.
Susan NieuwenhuizeUniversity of Colorado, School of Medicine, Anschutz Medical Campus, Department of Pediatrics, Section of Developmental Biology, 12801 E 17th Avenue, Aurora, CO 80045, USA.
Sibylle BurgerDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.
Gianluca D'AgatiDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.ORCID 0000-0002-1021-0015
Charles BetzGrowth & Development, Biozentrum, Spitalstrasse 41, University of Basel, 4056 Basel, Switzerland.ORCID 0000-0002-9837-6916
Ann-Christin PullerDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.
Anastasia FelkerDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.ORCID 0000-0002-3734-2026
Karolina DitrychovaDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.ORCID 0000-0002-2209-2941
Seraina BötschiDepartment of Molecular Life Sciences, University of Zurich, 8057 Zürich, Switzerland.
Markus AffolterGrowth & Development, Biozentrum, Spitalstrasse 41, University of Basel, 4056 Basel, Switzerland.ORCID 0000-0002-5171-0016
Nicolas RohnerStowers Institute for Medical Research, Kansas City, MO 64110, USA.ORCID 0000-0003-3248-2772
C Ben LovelyDepartment of Biochemistry and Molecular Genetics, University of Louisville School of Medicine, Louisville, KY 40202, USA.ORCID 0000-0002-7838-5823
Kristen M KwanDepartment of Human Genetics, University of Utah, Salt Lake City, UT 84112, USA.ORCID 0000-0003-0052-275X
Alexa BurgerUniversity of Colorado, School of Medicine, Anschutz Medical Campus, Department of Pediatrics, Section of Developmental Biology, 12801 E 17th Avenue, Aurora, CO 80045, USA.ORCID 0000-0001-7137-3910
Christian MosimannUniversity of Colorado, School of Medicine, Anschutz Medical Campus, Department of Pediatrics, Section of Developmental Biology, 12801 E 17th Avenue, Aurora, CO 80045, USA.ORCID 0000-0002-0749-2576

Funding

DEVELOPMENTAL BIOLOGY TRAINING PROGRAMT32HD007491 · NICHD · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI James Alan Gagnon, Kristen M Kwan · 1995 to 2026
$8.0M
Hedgehog Signaling in Optic Fissure Morphogenesis and ColobomaR01EY025378 · NEI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Kristen M Kwan · 2015 to 2026
$3.2M
Stepwise Coordination of Eye Morphogenesis by Extracellular MatrixR01EY025780 · NEI · UNIVERSITY OF UTAH · PI KWAN, KRISTEN M · 2015 to 2024
$2.7M
Predoctoral Training in the Genetics of Development, Disease and RegenerationT32GM141742 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI Bruce H Appel, Jeffrey Kyle Moore · 2021 to 2026
$1.9M
Analysis of an ethanol-sensitive pathway regulating anterior craniofacial developmentR00AA023560 · NIAAA · UNIVERSITY OF LOUISVILLE · PI LOVELY, CHARLES BENJAMIN · 2018 to 2020
$747k
Developmental causes of syndromic Thrombocytopenia and co-morbiditiesR01DK129350 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI BURGER, ALEXA · 2022 to 2024
$690k
NEI NIH HHS R01 EY025378NEI NIH HHS R01 EY025780NIAAA NIH HHS R00 AA023560NICHD NIH HHS T32 HD007491NIDDK NIH HHS R01 DK129350NIGMS NIH HHS T32 GM141742
6 · The paper itself

Abstract

Transgenesis is an essential technique for any genetic model. Tol2-based transgenesis paired with Gateway-compatible vector collections has transformed zebrafish transgenesis with an accessible modular system. Here, we establish several next-generation transgenesis tools for zebrafish and other species to expand and enhance transgenic applications. To facilitate gene regulatory element testing, we generated Gateway middle entry vectors harboring the small mouse beta-globin minimal promoter coupled to several fluorophores, CreERT2 and Gal4. To extend the color spectrum for transgenic applications, we established middle entry vectors encoding the bright, blue-fluorescent protein mCerulean and mApple as an alternative red fluorophore. We present a series of p2A peptide-based 3' vectors with different fluorophores and subcellular localizations to co-label cells expressing proteins of interest. Finally, we established Tol2 destination vectors carrying the zebrafish exorh promoter driving different fluorophores as a pineal gland-specific transgenesis marker that is active before hatching and through adulthood. exorh-based reporters and transgenesis markers also drive specific pineal gland expression in the eye-less cavefish (Astyanax). Together, our vectors provide versatile reagents for transgenesis applications in zebrafish, cavefish and other models.

Indexed as

Gene Transfer TechniquesZebrafishAnimalsAnimals, Genetically ModifiedDNA Transposable ElementsMicePlasmidsPromoter Regions, GeneticDNA Transposable ElementsCavefishEnhancer discoveryFlurophoresTrangenesis markerTransgenesisZebrafish

Identifiers

PMID36975217
PMCPMC10263156

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.