Evidence map›Paper›PMID 36973511›Full record

ArticleNature neuroscience2023

A consensus protocol for functional connectivity analysis in the rat brain.

Joanes Grandjean, Gabriel Desrosiers-Gregoire, Cynthia Anckaerts, Diego Angeles-Valdez, Fadi Ayad, David A Barrière, Ines Blockx, Aleksandra Bortel, Margaret Broadwater, Beatriz M Cardoso and 199 more

Erratum issuedAbstract read
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In one paragraph

Article in Nature neuroscience, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 76 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Where do we stand on fMRI in awake mice?Cerebral cortex (New York, N.Y. : 1991) · 2024
    Pooled it
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16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

209 authors.

Joanes GrandjeanDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands. joanes.grandjean@radboudumc.nl.ORCID http://orcid.org/0000-0001-8413-0491
Gabriel Desrosiers-GregoireCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.
Cynthia AnckaertsBio-imaging Lab, University of Antwerp, Antwerp, Belgium.
Diego Angeles-ValdezInstituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, Mexico.
Fadi AyadBiological and Biomedical Engineering, McGill University, Montreal, QC, Canada.
David A BarrièreUMR INRAE/CNRS 7247 Physiologie des Comportements et de la Reproduction, Physiologie de la reproduction et des comportements, Centre de recherche INRAE de Nouzilly, Tours, France.ORCID http://orcid.org/0000-0003-4355-3329
Ines BlockxBio-imaging Lab, University of Antwerp, Antwerp, Belgium.
Aleksandra BortelMcConnell Brain Imaging Centre, McGill University, Montreal, QC, Canada.
Margaret BroadwaterCenter for Animal MRI, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Beatriz M CardosoPreclinical MRI, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.
Marina CélestineLaboratoire des Maladies Neurodégénératives, Molecular Imaging Research Center (MIRCen), Université Paris-Saclay, Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), CNRS, Fontenay-aux-Roses, France.
Jorge E Chavez-NegreteDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.
Sangcheon ChoiTranslational Neuroimaging and Neural Control Group, High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany.ORCID http://orcid.org/0000-0001-7327-1344
Emma ChristiaenInstitute Biomedical Technology (IBiTech), Electronics and Information Systems (ELIS), Ghent University, Gent, Belgium.
Perrin ClavijoDepartment of Biomedical Engineering, Emory University/Georgia Institute of Technology, Atlanta, GA, USA.
Luis Colon-PerezDepartment of Pharmacology & Neuroscience, University of North Texas Health Science Center, Fort Worth, TX, USA.ORCID http://orcid.org/0000-0001-8918-2418
Samuel CramerTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Tolomeo DanieleCentre for Advanced Biomedical Imaging, University College London, London, UK.
Elaine DempseyNeuropsychopharmacology Research Group, School of Pharmacy and Pharmaceutical Sciences, Trinity College Dublin, Dublin, Ireland.ORCID http://orcid.org/0000-0002-7084-2241
Yujian DiaoCIBM Center for Biomedical Imaging, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.
Arno DoelemeyerMusculoskeletal Diseases Department, Novartis Institutes for BioMedical Research, Basel, Switzerland.
David DopfelTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Lenka DvořákováBiomedical Imaging Unit, A.I.V. Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland.
Claudia Falfán-MelgozaTranslational Imaging, Department of Neuroimaging, Central Institute of Mental Health, Medical Faculty Mannheim, Mannheim, Germany.
Francisca F FernandesPreclinical MRI, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.ORCID http://orcid.org/0000-0001-7967-067X
Caitlin F FowlerCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.
Antonio Fuentes-IbañezDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.ORCID http://orcid.org/0000-0002-7841-3943
Clément M GarinLaboratoire des Maladies Neurodégénératives, Molecular Imaging Research Center (MIRCen), Université Paris-Saclay, Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), CNRS, Fontenay-aux-Roses, France.ORCID http://orcid.org/0000-0003-0712-7330
Eveline GeldermanDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-8019-6143
Carla E M GoldenSeaver Autism Center for Research & Treatment, Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.ORCID http://orcid.org/0000-0003-1445-3724
Chao C G GuoDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0003-1734-8524
Marloes J A G HenckensDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-2375-1611
Lauren A HennessyExperimental and Regenerative Neurosciences, School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0002-5296-7956
Peter HermanRadiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0003-2218-9652
Nita HofwijksDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Corey HorienRadiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-6738-1029
Tudor M IonescuWerner Siemens Imaging Center, Department of Preclinical Imaging and Radiopharmacy, University of Tuebingen, Tuebingen, Germany.
Jolyon JonesDepartment of Psychology, University of Cambridge, Cambridge, UK.
Johannes KaesserInstitute of Experimental and Clinical Pharmacology and Toxicology, FAU Erlangen-Nürnberg, Erlangen, Germany.
Eugene KimBiomarker Research And Imaging in Neuroscience (BRAIN) Centre, Department of Neuroimaging King's College London, London, UK.ORCID http://orcid.org/0000-0003-0066-7051
Henriette LambersExperimental Magnetic Resonance Group, Clinic of Radiology, University of Münster, Münster, Germany.ORCID http://orcid.org/0000-0002-6495-5514
Alberto LazariNuffield Department of Clinical Neurosciences, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK.
Sung-Ho LeeCenter for Animal MRI, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-5292-0747
Amanda LillywhiteSchool of Life Sciences, University of Nottingham, Nottingham, UK.ORCID http://orcid.org/0000-0002-3833-276X
Yikang LiuTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Yanyan Y LiuBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China.
Alejandra López-CastroInstituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, Mexico.ORCID http://orcid.org/0000-0002-5460-3857
Xavier López-GilMagnetic Imaging Resonance Core Facility, Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Barcelona, Spain.ORCID http://orcid.org/0000-0002-7468-6717
Zilu MaTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Eilidh MacNicolBiomarker Research And Imaging in Neuroscience (BRAIN) Centre, Department of Neuroimaging King's College London, London, UK.ORCID http://orcid.org/0000-0003-3715-7012
Dan MadularuBiological and Biomedical Engineering, McGill University, Montreal, QC, Canada.
Francesca MandinoRadiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-5605-0854
Sabina MarcianoWerner Siemens Imaging Center, Department of Preclinical Imaging and Radiopharmacy, University of Tuebingen, Tuebingen, Germany.
Matthew J McAuslanNeuropsychopharmacology Research Group, School of Pharmacy and Pharmaceutical Sciences, Trinity College Dublin, Dublin, Ireland.
Patrick McCunnKhokhar Lab, Department of Anatomy and Cell Biology, Western University, London, ON, Canada.
Alison McIntoshNeuropsychopharmacology Research Group, School of Pharmacy and Pharmaceutical Sciences, Trinity College Dublin, Dublin, Ireland.
Xianzong MengDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Lisa Meyer-BaeseDepartment of Biomedical Engineering, Emory University/Georgia Institute of Technology, Atlanta, GA, USA.
Stephan MissaultBio-imaging Lab, University of Antwerp, Antwerp, Belgium.
Federico MoroLaboratory of Acute Brain Injury and Therapeutic Strategies, Department of NeuroscienceIstituto di Ricerche Farmacologiche Mario Negri, IRCCS, Milan, Italy.ORCID http://orcid.org/0000-0002-2682-5583
Daphne M P NaessensBiomedical Engineering and Physics, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.ORCID http://orcid.org/0000-0001-7898-2559
Laura J Nava-GomezFacultad de Medicina, Universidad Autónoma de Querétaro, Querétaro, México.ORCID http://orcid.org/0000-0002-3854-3604
Hiroi NonakaInstitute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Juan J OrtizDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.
Jaakko PaasonenBiomedical Imaging Unit, A.I.V. Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland.
Lore M PeetersBio-imaging Lab, University of Antwerp, Antwerp, Belgium.
Mickaël PereiraLyon Neuroscience Research Center, Université Claude Bernard Lyon 1, INSERM, CNRS, Lyon, France.ORCID http://orcid.org/0000-0001-5502-4681
Pablo D PerezTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.
Marjory PompilusFebo Laboratory, Department of Psychiatry, University of Florida, Gainesville, FL, USA.
Malcolm PriorSchool of Medicine, University of Nottingham, Nottingham, UK.
Rustam RakhmatullinComparative Medicine Unit, Trinity College Dublin, Dublin, Ireland.
Henning M ReimannBerlin Ultrahigh Field Facility (B.U.F.F.), Max-Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Jonathan ReinwaldTranslational Imaging, Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany.
Rodrigo Triana Del RioPsychiatric neurosciences, Center for Psychiatric Neuroscience, Lausanne University and University Hospital Center, Unicentre, Lausanne, Switzerland.
Alejandro Rivera-OlveraDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Daniel Ruiz-PérezComparative Medicine Unit, Trinity College Dublin, Dublin, Ireland.
Gabriele RussoDepartment of Neurophysiology, Medical Faculty, Ruhr University Bochum, Bochum, Germany.
Tobias J RuttenDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Rie RyokeInstitute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Markus SackTranslational Imaging, Department of Neuroimaging, Central Institute of Mental Health, Medical Faculty Mannheim, Mannheim, Germany.
Piergiorgio SalvanNuffield Department of Clinical Neurosciences, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK.ORCID http://orcid.org/0000-0003-3947-9541
Basavaraju G SanganahalliRadiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0002-0851-6621
Aileen SchroeterInstitute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland.
Bhedita J SeewooExperimental and Regenerative Neurosciences, School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0003-4679-4857
Erwan SelingueNeuroSpin, CEA Saclay, Paris, France.
Aline SeuwenInstitute for Biomedical Engineering, University and ETH Zurich, Zurich, Switzerland.
Bowen ShiiHuman Institute, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0001-9320-144X
Nikoloz SirmpilatzeFunctional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany.ORCID http://orcid.org/0000-0003-1778-2427
Joanna A B SmithSimons Initiative for the Developing Brain, University of Edinburgh, Edinburgh, UK.
Corrie SmithDepartment of Biomedical Engineering, Emory University/Georgia Institute of Technology, Atlanta, GA, USA.
Filip SobczakTranslational Neuroimaging and Neural Control Group, High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany.ORCID http://orcid.org/0000-0001-9169-0243
Petteri J StenroosUniv. Grenoble Alpes, Inserm, U1216, Grenoble Institut Neurosciences, Grenoble, France.
Milou StraathofBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Sandra StrobeltInstitute of Experimental and Clinical Pharmacology and Toxicology, FAU Erlangen-Nürnberg, Erlangen, Germany.
Akira SumiyoshiInstitute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Kengo TakahashiTranslational Neuroimaging and Neural Control Group, High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany.
Maria E Torres-GarcíaDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.
Raul TudelaGroup of Biomedical Imaging, Consorcio Centro de Investigación Biomédica en Red (CIBER) de Bioingeniería, Biomateriales y Nanomedicina (CIBER-BBN), University of Barcelona, Barcelona, Spain.
Monica van den BergBio-imaging Lab, University of Antwerp, Antwerp, Belgium.ORCID http://orcid.org/0000-0003-1356-270X
Kajo van der MarelBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Aran T B van HoutDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Roberta VertulloDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Benjamin VidalLyon Neuroscience Research Center, Université Claude Bernard Lyon 1, INSERM, CNRS, Lyon, France.ORCID http://orcid.org/0000-0003-0780-4215
Roël M VroomanDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-2859-6681
Victora X WangBioMedical Engineering and Imaging Institute, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.
Isabel WankInstitute of Experimental and Clinical Pharmacology and Toxicology, FAU Erlangen-Nürnberg, Erlangen, Germany.
David J G WatsonSchool of Life Sciences, University of Nottingham, Nottingham, UK.
Ting YinAnimal Imaging and Technology Section, Center for Biomedical Imaging, École polytechnique fédérale de Lausanne, Lausanne, Switzerland.
Yongzhi ZhangFocused Ultrasound Laboratory, Department of Radiology Brigham and Women's Hospital, Boston, MA, USA.
Stefan ZurbrueggNeurosciences Department, Novartis Institutes for BioMedical Research, Basel, Switzerland.
Sophie AchardInria, University Grenoble Alpes, CNRS, Grenoble, France.ORCID http://orcid.org/0000-0001-9448-1199
Sarael AlcauterDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.
Dorothee P AuerSchool of Medicine, University of Nottingham, Nottingham, UK.
Emmanuel L BarbierUniv. Grenoble Alpes, Inserm, U1216, Grenoble Institut Neurosciences, Grenoble, France.ORCID http://orcid.org/0000-0002-4952-1240
Jürgen BaudewigFunctional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany.
Christian F BeckmannDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Nicolau BeckmannMusculoskeletal Diseases Department, Novartis Institutes for BioMedical Research, Basel, Switzerland.ORCID http://orcid.org/0000-0001-7636-9240
Guillaume J P C BecqGipsa-lab, University Grenoble Alpes, CNRS, Grenoble, France.ORCID http://orcid.org/0000-0002-2134-1803
Erwin L A BlezerBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Radu BolbosCERMEP - Imagerie du vivant, Lyon, France.
Susann BoretiusFunctional Imaging Laboratory, German Primate Center - Leibniz Institute for Primate Research, Göttingen, Germany.ORCID http://orcid.org/0000-0003-2792-7423
Sandrine BouvardLyon Neuroscience Research Center, Université Claude Bernard Lyon 1, INSERM, CNRS, Lyon, France.
Eike BudingerCombinatorial NeuroImaging Core Facility, Leibniz Institute for Neurobiology, Magdeburg, Germany.ORCID http://orcid.org/0000-0003-2420-8159
Joseph D BuxbaumSeaver Autism Center for Research & Treatment, Department of Psychiatry, Icahn School of Medicine at Mount Sinai, New York City, NY, USA.ORCID http://orcid.org/0000-0001-8898-8313
Diana CashBiomarker Research And Imaging in Neuroscience (BRAIN) Centre, Department of Neuroimaging King's College London, London, UK.ORCID http://orcid.org/0000-0001-5021-1234
Victoria ChapmanSchool of Life Sciences, University of Nottingham, Nottingham, UK.
Kai-Hsiang ChuangQueensland Brain Institute and Centre for Advanced Imaging, University of Queensland, St. Lucia, QLD, Australia.ORCID http://orcid.org/0000-0002-8356-0657
Luisa CiobanuNeuroSpin, CEA Saclay, Paris, France.
Bram F CoolenBiomedical Engineering and Physics, Amsterdam UMC, University of Amsterdam, Amsterdam, The Netherlands.
Jeffrey W DalleyDepartment of Psychology, University of Cambridge, Cambridge, UK.
Marc DhenainLaboratoire des Maladies Neurodégénératives, Molecular Imaging Research Center (MIRCen), Université Paris-Saclay, Commissariat à l'Énergie Atomique et aux Énergies Alternatives (CEA), CNRS, Fontenay-aux-Roses, France.ORCID http://orcid.org/0000-0001-8804-4101
Rick M DijkhuizenBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Oscar EstebanLausanne University Hospital and University of Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-8435-6191
Cornelius FaberExperimental Magnetic Resonance Group, Clinic of Radiology, University of Münster, Münster, Germany.ORCID http://orcid.org/0000-0001-7683-7710
Marcelo FeboFebo Laboratory, Department of Psychiatry, University of Florida, Gainesville, FL, USA.
Kirk W FeindelCentre for Microscopy, Characterisation & Analysis, Research Infrastructure Centres, University of Western Australia, Nedlands, WA, Australia.
Gianluigi ForloniBiology of Neurodogenerative Disorders, Department of Neuroscience Istituto di Ricerche Farmacologiche Mario Negri, IRCCS, Milan, Italy.ORCID http://orcid.org/0000-0001-5374-3914
Jérémie FouquetCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.
Eduardo A Garza-VillarrealInstituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, Mexico.
Natalia GassTranslational Imaging, Department of Neuroimaging, Central Institute of Mental Health, Medical Faculty Mannheim, Mannheim, Germany.
Jeffrey C GlennonConway Institute of Biomedical and Biomolecular Sciences, School of Medicine, University College Dublin, Dublin, Ireland.
Alessandro GozziFunctional Neuroimaging Laboratory, Center for Neuroscience and Cognitive Systems, Istituto Italiano di Tecnologia, Rovereto, Italy.ORCID http://orcid.org/0000-0002-5731-4137
Olli GröhnBiomedical Imaging Unit, A.I.V. Institute for Molecular Sciences, University of Eastern Finland, Kuopio, Finland.
Andrew HarkinNeuropsychopharmacology Research Group, School of Pharmacy and Pharmaceutical Sciences, Trinity College Dublin, Dublin, Ireland.
Arend HeerschapDepartment for Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0001-9930-4562
Xavier HelluyDepartment of Neurophysiology, Medical Faculty, Ruhr University Bochum, Bochum, Germany.
Kristina HerfertWerner Siemens Imaging Center, Department of Preclinical Imaging and Radiopharmacy, University of Tuebingen, Tuebingen, Germany.ORCID http://orcid.org/0000-0003-0231-7717
Arnd HeuserMax-Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.ORCID http://orcid.org/0000-0002-3334-960X
Judith R HombergDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-7621-1010
Danielle J HouwingDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Fahmeed HyderRadiology and Biomedical Imaging, Yale University School of Medicine, New Haven, CT, USA.ORCID http://orcid.org/0000-0001-7822-4002
Giovanna Diletta IelacquaMax-Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Ileana O JelescuCIBM Center for Biomedical Imaging, Ecole Polytechnique Fédérale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0002-3664-0195
Heidi Johansen-BergNuffield Department of Clinical Neurosciences, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK.
Gen KanekoSchool of Arts & Sciences, University of Houston-Victoria, Victoria, TX, USA.ORCID http://orcid.org/0000-0003-4295-5123
Ryuta KawashimaInstitute of Development, Aging and Cancer, Tohoku University, Sendai, Japan.
Shella D KeilholzDepartment of Biomedical Engineering, Emory University/Georgia Institute of Technology, Atlanta, GA, USA.ORCID http://orcid.org/0000-0001-5737-1660
Georgios A KelirisBio-imaging Lab, University of Antwerp, Antwerp, Belgium.ORCID http://orcid.org/0000-0001-6732-1261
Clare KellyTrinity College Institute of Neuroscience, Trinity College Dublin, Dublin, Ireland.ORCID http://orcid.org/0000-0001-8253-357X
Christian KerskensTrinity College Institute of Neuroscience, Trinity College Dublin, Dublin, Ireland.
Jibran Y KhokharKhokhar Lab, Department of Anatomy and Cell Biology, Western University, London, ON, Canada.
Peter C KindSimons Initiative for the Developing Brain, University of Edinburgh, Edinburgh, UK.
Jean-Baptiste LangloisCERMEP - Imagerie du vivant, Lyon, France.
Jason P LerchNuffield Department of Clinical Neurosciences, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK.
Monica A López-HidalgoEscuela Nacional de Estudios Superiores, Juriquilla, Universidad Nacional Autónoma de México, Querétaro, México.
Denise Manahan-VaughanDepartment of Neurophysiology, Medical Faculty, Ruhr University Bochum, Bochum, Germany.
Fabien MarchandUniversité Clermont Auvergne, Inserm U1107 Neuro-Dol, Pharmacologie Fondamentale et Clinique de la Douleur, Clermont-Ferrand, France.
Rogier B MarsDonders Institute for Brain, Behaviour, and Cognition, Radboud University, Nijmegen, The Netherlands.
Gerardo MarsellaAnimal Care Unit, Istituto di Ricerche Farmacologiche Mario Negri, IRCCS, Milan, Italy.
Edoardo MicottiBiology of Neurodogenerative Disorders, Department of Neuroscience Istituto di Ricerche Farmacologiche Mario Negri, IRCCS, Milan, Italy.
Emma Muñoz-MorenoMagnetic Imaging Resonance Core Facility, Institut d'Investigacions Biomèdiques August Pi I Sunyer (IDIBAPS), Barcelona, Spain.ORCID http://orcid.org/0000-0003-2104-7265
Jamie NearCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.ORCID http://orcid.org/0000-0003-3516-936X
Thoralf NiendorfBerlin Ultrahigh Field Facility (B.U.F.F.), Max-Delbrück Center for Molecular Medicine in the Helmholtz Association, Berlin, Germany.
Willem M OtteBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.
Patricia Pais-RoldánTranslational Neuroimaging and Neural Control Group, High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany.ORCID http://orcid.org/0000-0002-9381-3048
Wen-Ju PanDepartment of Biomedical Engineering, Emory University/Georgia Institute of Technology, Atlanta, GA, USA.
Roberto A Prado-AlcaláDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.
Gina L QuirarteDepartamento de Neurobiología Conductual y Cognitiva, Instituto de Neurobiología, Universidad Nacional Autónoma de México, Campus Juriquilla, Querétaro, México.ORCID http://orcid.org/0000-0002-3928-304X
Jennifer RodgerExperimental and Regenerative Neurosciences, School of Biological Sciences, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0003-3413-4229
Tim RosenowCentre for Microscopy, Characterisation and Analysis, University of Western Australia, Crawley, WA, Australia.ORCID http://orcid.org/0000-0003-3727-5131
Cassandra Sampaio-BaptistaNuffield Department of Clinical Neurosciences, Wellcome Centre for Integrative Neuroimaging, FMRIB, University of Oxford, John Radcliffe Hospital, Headington, Oxford, UK.ORCID http://orcid.org/0000-0002-7893-0289
Alexander SartoriusTranslational Imaging, Department of Psychiatry and Psychotherapy, Central Institute of Mental Health, Medical Faculty Mannheim, University of Heidelberg, Mannheim, Germany.ORCID http://orcid.org/0000-0002-1243-3693
Stephen J SawiakTranslational Neuroimaging Laboratory, Physiology, Development and Neuroscience, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-4210-9816
Tom W J ScheenenDepartment for Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-4468-1480
Noam ShemeshPreclinical MRI, Champalimaud Research, Champalimaud Centre for the Unknown, Lisbon, Portugal.ORCID http://orcid.org/0000-0001-6681-5876
Yen-Yu Ian ShihCenter for Animal MRI, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.ORCID http://orcid.org/0000-0001-6529-911X
Amir ShmuelBiological and Biomedical Engineering, McGill University, Montreal, QC, Canada.ORCID http://orcid.org/0000-0003-3028-6639
Guadalupe SoriaLaboratory of Surgical Neuroanatomy, Institute of Neuroscience, University of Barcelona, Barcelona, Spain.ORCID http://orcid.org/0000-0002-8344-0479
Ron StoopPsychiatric neurosciences, Center for Psychiatric Neuroscience, Lausanne University and University Hospital Center, Unicentre, Lausanne, Switzerland.
Garth J ThompsoniHuman Institute, ShanghaiTech University, Shanghai, China.ORCID http://orcid.org/0000-0002-1125-0799
Sally M TillSimons Initiative for the Developing Brain, University of Edinburgh, Edinburgh, UK.
Nick ToddFocused Ultrasound Laboratory, Department of Radiology Brigham and Women's Hospital, Boston, MA, USA.
Annemie Van Der LindenBio-imaging Lab, University of Antwerp, Antwerp, Belgium.
Annette van der ToornBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4956-1143
Geralda A F van TilborgBiomedical MR Imaging and Spectroscopy Group, Center for Image Sciences, University Medical Center Utrecht & Utrecht University, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0001-8398-6503
Christian VanhoveInstitute Biomedical Technology (IBiTech), Electronics and Information Systems (ELIS), Ghent University, Gent, Belgium.ORCID http://orcid.org/0000-0002-3988-5980
Andor VeltienDepartment for Medical Imaging, Radboud University Medical Center, Nijmegen, The Netherlands.ORCID http://orcid.org/0000-0002-8090-5445
Marleen VerhoyeBio-imaging Lab, University of Antwerp, Antwerp, Belgium.ORCID http://orcid.org/0000-0002-6267-0611
Lydia WachsmuthExperimental Magnetic Resonance Group, Clinic of Radiology, University of Münster, Münster, Germany.
Wolfgang Weber-FahrTranslational Imaging, Department of Neuroimaging, Central Institute of Mental Health, Medical Faculty Mannheim, Mannheim, Germany.
Patricia WenkCombinatorial NeuroImaging Core Facility, Leibniz Institute for Neurobiology, Magdeburg, Germany.
Xin YuTranslational Neuroimaging and Neural Control Group, High-Field Magnetic Resonance, Max Planck Institute for Biological Cybernetics, Tuebingen, Germany.
Valerio ZerbiNeuro-X Institute, School of Engineering (STI), EPFL, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-7984-9565
Nanyin ZhangTranslational Neuroimaging and Systems Neuroscience Lab, Biomedical Engineering, Pennsylvania State University, University Park, PA, USA.ORCID http://orcid.org/0000-0002-5824-9058
Baogui B ZhangBrainnetome Center, Institute of Automation, Chinese Academy of Sciences, Beijing, China.
Luc ZimmerLyon Neuroscience Research Center, Université Claude Bernard Lyon 1, INSERM, CNRS, Lyon, France.ORCID http://orcid.org/0000-0002-2805-7098
Gabriel A DevenyiCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.ORCID http://orcid.org/0000-0002-7766-1187
M Mallar ChakravartyCerebral Imaging Centre, Douglas Mental Health University Institute, Verdun, QC, Canada.
Andreas HessInstitute of Experimental and Clinical Pharmacology and Toxicology, FAU Erlangen-Nürnberg, Erlangen, Germany.ORCID http://orcid.org/0000-0001-5227-3068

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007205 · NIGMS · YALE UNIVERSITY · PI KAZMIERCZAK, BARBARA I · 1985 to 2019
$42.9M
Medical Scientist Training ProgramT32GM136651 · NIGMS · YALE UNIVERSITY · PI BARBARA I KAZMIERCZAK · 2020 to 2026
$16.5M
Supplement to Molecular and Cellular Studies on Alcohol's ActionsT32AA007573 · NIAAA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI FULTON T CREWS, Thomas L. Kash · 1997 to 2026
$9.3M
NeurophysiologicP30NS052519 · NINDS · YALE UNIVERSITY · PI HYDER, DEWAN SYED FAHMEED · 2007 to 2017
$6.7M
Energetics of Neuronal Populations by fMRIR01MH067528 · NIMH · YALE UNIVERSITY · PI HYDER, DEWAN SYED FAHMEED · 2002 to 2021
$5.9M
Circuit Mechanisms Governing the Default Mode NetworkR01MH126518 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Vinod Menon, Yen-Yu Ian Shih · 2021 to 2026
$4.3M
Mechanisms underlying positive and negative BOLD in the striatumRF1MH117053 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI SHIH, YEN-YU IAN · 2018 to 2019
$4.0M
Mechanistic dissection of the neural basis of the resting-state fMRI signal using multi-modal approachesRF1MH114224 · NIMH · PENNSYLVANIA STATE UNIVERSITY, THE · PI DREW, PATRICK JAMES, ZHANG, NANYIN · 2017 to 2018
$3.8M
Contribution of Ultra Low Frequency LFPs to Functional MRIR01NS078095 · NINDS · EMORY UNIVERSITY · PI KEILHOLZ, SHELLA D · 2012 to 2022
$3.4M
Resting-state Neural Networks in Awake RodentsR01NS085200 · NINDS · PENNSYLVANIA STATE UNIVERSITY, THE · PI ZHANG, NANYIN · 2013 to 2024
$3.4M
Investigating the Thalamic Regulation of Neuro-Glio-Vascular Restoration Underlying Acute Coma Recovery with Multi-Modal fMRI in a Brainstem Coma Rodent ModelR01NS122904 · NINDS · MASSACHUSETTS GENERAL HOSPITAL · PI YU, XIN · 2021 to 2025
$3.2M
CSRD VA I01 CX000642NCATS NIH HHS UL1 TR001863NCRR NIH HHS S10 RR025671NIAAA NIH HHS T32 AA007573NIA NIH HHS R21 AG065819NIBIB NIH HHS K01 EB023983NIBIB NIH HHS R01 EB029857NIBIB NIH HHS T32 EB025816NIDA NIH HHS K25 DA047458NIDA NIH HHS R03 DA042971NIGMS NIH HHS T32 GM007205NIGMS NIH HHS T32 GM136651NIH HHS S10 OD026796NIH HHS S10 OD028616NIMH NIH HHS F31 MH115656NIMH NIH HHS R01 MH067528NIMH NIH HHS R01 MH098003NIMH NIH HHS R01 MH111416NIMH NIH HHS R01 MH126518NIMH NIH HHS R21 MH116473NIMH NIH HHS R37 MH085953NIMH NIH HHS RF1 MH114224NIMH NIH HHS RF1 MH117053NIMH NIH HHS S10 MH124733NIMH NIH HHS S10 MH124745NINDS NIH HHS P30 NS052519NINDS NIH HHS R01 NS078095NINDS NIH HHS R01 NS085200NINDS NIH HHS R01 NS122904NINDS NIH HHS R21 NS121642NINDS NIH HHS RF1 NS113278Wellcome Trust 212219/Z/18/Z
6 · The paper itself

Abstract

Task-free functional connectivity in animal models provides an experimental framework to examine connectivity phenomena under controlled conditions and allows for comparisons with data modalities collected under invasive or terminal procedures. Currently, animal acquisitions are performed with varying protocols and analyses that hamper result comparison and integration. Here we introduce StandardRat, a consensus rat functional magnetic resonance imaging acquisition protocol tested across 20 centers. To develop this protocol with optimized acquisition and processing parameters, we initially aggregated 65 functional imaging datasets acquired from rats across 46 centers. We developed a reproducible pipeline for analyzing rat data acquired with diverse protocols and determined experimental and processing parameters associated with the robust detection of functional connectivity across centers. We show that the standardized protocol enhances biologically plausible functional connectivity patterns relative to previous acquisitions. The protocol and processing pipeline described here is openly shared with the neuroimaging community to promote interoperability and cooperation toward tackling the most important challenges in neuroscience.

Indexed as

BrainBrain MappingAnimalsConsensusMagnetic Resonance ImagingNeuroimagingRats

Identifiers

PMID36973511
PMCPMC10493189

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