Evidence map›Paper›PMID 36973509›Full record

ArticleNature structural & molecular biology2023

Discrimination between cyclic nucleotides in a cyclic nucleotide-gated ion channel.

Yangang Pan, Emmi Pohjolainen, Philipp A M Schmidpeter, Andrea C Vaiana, Crina M Nimigean, Helmut Grubmüller, Simon Scheuring

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Molecular contacts in self-assembling clusters of membrane proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  4. Review
  5. AFM Imaging Reveals MicroRNA-132 to be a Positive Regulator of Synaptic Functions.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Yangang PanDepartment of Anesthesiology, Weill Cornell Medicine, New York, NY, USA.
Emmi PohjolainenMax Planck Institute for Multidisciplinary Sciences, Theoretical and Computational Biophysics Department, Goettingen, Germany.
Philipp A M SchmidpeterDepartment of Anesthesiology, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0003-2871-9706
Andrea C VaianaMax Planck Institute for Multidisciplinary Sciences, Theoretical and Computational Biophysics Department, Goettingen, Germany.ORCID 0000-0002-8865-0651
Crina M NimigeanDepartment of Anesthesiology, Weill Cornell Medicine, New York, NY, USA.ORCID 0000-0002-6254-4447
Helmut GrubmüllerMax Planck Institute for Multidisciplinary Sciences, Theoretical and Computational Biophysics Department, Goettingen, Germany.ORCID 0000-0002-3270-3144
Simon ScheuringDepartment of Anesthesiology, Weill Cornell Medicine, New York, NY, USA. sis2019@med.cornell.edu.ORCID 0000-0003-3534-069X
Cornell University · USMax Planck Institute for Multidisciplinary SciencesNational Research Council · IT

Funding

Enabling physical stimuli in the study of structural dynamics: The sensory ion channelsDP1AT010874 · NCCIH · WEILL MEDICAL COLL OF CORNELL UNIV · PI SCHEURING, SIMON · 2019 to 2023
$5.9M
Structural dynamics in cyclic nucleotide-modulated channelsR01GM124451 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIMIGEAN, CRINA M · 2017 to 2024
$3.2M
High-speed atomic force microscopy with microsecond time resolution for the study of channels and transportersR01NS110790 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Simon Scheuring · 2019 to 2026
$2.4M
American Heart Association-American Stroke Association 18POST33960309NCCIH NIH HHS DP1 AT010874NIGMS NIH HHS R01 GM124451NINDS NIH HHS R01 NS110790
6 · The paper itself

Abstract

Cyclic nucleotide-gated ion channels are crucial in many physiological processes such as vision and pacemaking in the heart. SthK is a prokaryotic homolog with high sequence and structure similarities to hyperpolarization-activated and cyclic nucleotide-modulated and cyclic nucleotide-gated channels, especially at the level of the cyclic nucleotide binding domains (CNBDs). Functional measurements showed that cyclic adenosine monophosphate (cAMP) is a channel activator while cyclic guanosine monophosphate (cGMP) barely leads to pore opening. Here, using atomic force microscopy single-molecule force spectroscopy and force probe molecular dynamics simulations, we unravel quantitatively and at the atomic level how CNBDs discriminate between cyclic nucleotides. We find that cAMP binds to the SthK CNBD slightly stronger than cGMP and accesses a deep-bound state that a cGMP-bound CNBD cannot reach. We propose that the deep binding of cAMP is the discriminatory state that is essential for cAMP-dependent channel activation.

Indexed as

Cyclic Nucleotide-Gated Cation ChannelsNucleotides, CyclicCyclic AMPCyclic GMPIon Channel GatingCyclic AMPCyclic GMPCyclic Nucleotide-Gated Cation ChannelsNucleotides, Cyclic

Identifiers

PMID36973509
PMCPMC10194703
OpenAlexW4360999046

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.