Evidence map›Paper›PMID 36973495›Full record

ReviewNature reviews. Nephrology2023

Immunogenicity in renal cell carcinoma: shifting focus to alternative sources of tumour-specific antigens.

Melissa M Wolf, W Kimryn Rathmell, Aguirre A de Cubas

Open access · greenAbstract readReview
In one paragraph

Review in Nature reviews. Nephrology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 27 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Melissa M WolfDepartment of Medicine, Program in Cancer Biology, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.
W Kimryn RathmellDepartment of Medicine, Program in Cancer Biology, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA. kimryn.rathmell@vumc.org.ORCID 0000-0002-4984-0225
Aguirre A de CubasDepartment of Microbiology and Immunology, Medical University of South Carolina, Charleston, SC, USA. decubas@musc.edu.ORCID 0000-0002-9185-9544
Vanderbilt University Medical Center · USMedical University of South Carolina · US

Funding

Metabolic Barriers to T Cell Activation in Clear Cell Renal Cell CarcinomaR01CA217987 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Jeffrey C Rathmell · 2018 to 2026
$4.3M
Activation of transposable elements as an endogenous source of neoepitopes and mediators of tumor immunogenicityK01CA245231 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI DE CUBAS, AGUIRRE A · 2020 to 2024
$600k
Pseudo-hypoxic contributions to the tumor microenvironment in kidney cancerF31CA261049 · NCI · VANDERBILT UNIVERSITY · PI WOLF, MELISSA M · 2022 to 2024
$78k
NCI NIH HHS F31 CA261049NCI NIH HHS K01 CA245231NCI NIH HHS R01 CA217987
6 · The paper itself

Abstract

Renal cell carcinoma (RCC) comprises a group of malignancies arising from the kidney with unique tumour-specific antigen (TSA) signatures that can trigger cytotoxic immunity. Two classes of TSAs are now considered potential drivers of immunogenicity in RCC: small-scale insertions and deletions (INDELs) that result in coding frameshift mutations, and activation of human endogenous retroviruses. The presence of neoantigen-specific T cells is a hallmark of solid tumours with a high mutagenic burden, which typically have abundant TSAs owing to non-synonymous single nucleotide variations within the genome. However, RCC exhibits high cytotoxic T cell reactivity despite only having an intermediate non-synonymous single nucleotide variation mutational burden. Instead, RCC tumours have a high pan-cancer proportion of INDEL frameshift mutations, and coding frameshift INDELs are associated with high immunogenicity. Moreover, cytotoxic T cells in RCC subtypes seem to recognize tumour-specific endogenous retrovirus epitopes, whose presence is associated with clinical responses to immune checkpoint blockade therapy. Here, we review the distinct molecular landscapes in RCC that promote immunogenic responses, discuss clinical opportunities for discovery of biomarkers that can inform therapeutic immune checkpoint blockade strategies, and identify gaps in knowledge for future investigations.

Indexed as

Carcinoma, Renal CellKidney NeoplasmsAntigens, NeoplasmHumansImmune Checkpoint InhibitorsNucleotidesAntigens, NeoplasmImmune Checkpoint InhibitorsNucleotides

Identifiers

PMID36973495
PMCPMC10801831
OpenAlexW4360999536

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.