Evidence map›Paper›PMID 36973414›Full record

ArticleNature plants2023

Multi-Knock-a multi-targeted genome-scale CRISPR toolbox to overcome functional redundancy in plants.

Yangjie Hu, Priyanka Patra, Odelia Pisanty, Anat Shafir, Zeinu Mussa Belew, Jenia Binenbaum, Shir Ben Yaakov, Bihai Shi, Laurence Charrier, Gal Hyams and 11 more

Open access · greenAbstract read
In one paragraph

Article in Nature plants, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
25.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Review
  14. Review
  15. Article
  16. Review
  17. Reporter Alleles in hiPSCs: Visual Cues on Development and Disease.International journal of molecular sciences · 2024
    Review
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

21 authors at 4 institutions in 4 countries.

Yangjie HuSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.ORCID http://orcid.org/0000-0002-0910-6384
Priyanka Patra *School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Odelia Pisanty *School of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Anat ShafirSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Zeinu Mussa BelewDynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID http://orcid.org/0000-0001-5904-5885
Jenia BinenbaumSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.ORCID http://orcid.org/0000-0003-4724-3563
Shir Ben YaakovSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Bihai ShiLaboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, Lyon, France.
Laurence CharrierDepartment of Biology, University of Fribourg, Fribourg, Switzerland.
Gal HyamsSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Yuqin ZhangSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Maor TrabulskySchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Omer CaldararuSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Daniela WeissSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.
Christoph CrocollDynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID http://orcid.org/0000-0003-2754-3518
Adi AvniSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel.ORCID http://orcid.org/0000-0003-2092-9768
Teva VernouxLaboratoire Reproduction et Développement des Plantes, Université de Lyon, ENS de Lyon, CNRS, INRAE, Lyon, France.ORCID http://orcid.org/0000-0002-8257-4088
Markus GeislerDepartment of Biology, University of Fribourg, Fribourg, Switzerland.ORCID http://orcid.org/0000-0002-6641-5810
Hussam Hassan Nour-EldinDynaMo Center, Department of Plant and Environmental Sciences, University of Copenhagen, Frederiksberg, Denmark.ORCID http://orcid.org/0000-0001-6660-0509
Itay MayroseSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel. itaymay@tauex.tau.ac.il.ORCID http://orcid.org/0000-0002-8460-1502
Eilon ShaniSchool of Plant Sciences and Food Security, Tel Aviv University, Tel Aviv, Israel. eilonsh@tauex.tau.ac.il.ORCID http://orcid.org/0000-0002-1262-350X
Tel Aviv University · ILUniversité Claude Bernard Lyon 1 · FRUniversity of Copenhagen · DKUniversity of Fribourg · CH

Funding

European Research Council 757683
6 · The paper itself

Abstract

Plant genomes are characterized by large and complex gene families that often result in similar and partially overlapping functions. This genetic redundancy severely hampers current efforts to uncover novel phenotypes, delaying basic genetic research and breeding programmes. Here we describe the development and validation of Multi-Knock, a genome-scale clustered regularly interspaced short palindromic repeat toolbox that overcomes functional redundancy in Arabidopsis by simultaneously targeting multiple gene-family members, thus identifying genetically hidden components. We computationally designed 59,129 optimal single-guide RNAs that each target two to ten genes within a family at once. Furthermore, partitioning the library into ten sublibraries directed towards a different functional group allows flexible and targeted genetic screens. From the 5,635 single-guide RNAs targeting the plant transportome, we generated over 3,500 independent Arabidopsis lines that allowed us to identify and characterize the first known cytokinin tonoplast-localized transporters in plants. With the ability to overcome functional redundancy in plants at the genome-scale level, the developed strategy can be readily deployed by scientists and breeders for basic research and to expedite breeding efforts.

Indexed as

ArabidopsisClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Cas SystemsGene EditingGenome, PlantPlant BreedingPlantsPlants, Genetically Modified

Identifiers

PMID36973414
PMCPMC7615256
OpenAlexW4360999054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.