Evidence map›Paper›PMID 36973259›Full record

ArticleNature communications2023

Phytochrome B photobodies are comprised of phytochrome B and its primary and secondary interacting proteins.

Chanhee Kim, Yongmin Kwon, Jaehoon Jeong, Minji Kang, Ga Seul Lee, Jeong Hee Moon, Hyo-Jun Lee, Youn-Il Park, Giltsu Choi

Open access · goldFull text read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
30.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 76 citations in OpenAlex.

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  20. Transcription regulation by biomolecular condensates.Nature reviews. Molecular cell biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Chanhee Kim *Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.ORCID 0000-0001-6257-6628
Yongmin Kwon *Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.ORCID 0000-0003-3412-9999
Jaehoon JeongDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.
Minji KangDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea.
Ga Seul LeeDisease Target Structure Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea.
Jeong Hee MoonDisease Target Structure Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea.
Hyo-Jun LeePlant Systems Engineering Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon, 34141, Korea.ORCID 0000-0002-0690-7522
Youn-Il ParkDepartment of Biological Sciences, Chungnam National University, Daejeon, 34134, Korea.
Giltsu ChoiDepartment of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Korea. gchoi@kaist.ac.kr.ORCID 0000-0001-9962-8321
Korea Advanced Institute of Science and Technology · KRKorea Research Institute of Bioscience and Biotechnology · KRChungbuk National University · KRChungnam National University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phytochrome B (phyB) is a plant photoreceptor that forms a membraneless organelle called a photobody. However, its constituents are not fully known. Here, we isolated phyB photobodies from Arabidopsis leaves using fluorescence-activated particle sorting and analyzed their components. We found that a photobody comprises ~1,500 phyB dimers along with other proteins that could be classified into two groups: The first includes proteins that directly interact with phyB and localize to the photobody when expressed in protoplasts, while the second includes proteins that interact with the first group proteins and require co-expression of a first-group protein to localize to the photobody. As an example of the second group, TOPLESS interacts with PHOTOPERIODIC CONTROL OF HYPOCOTYL 1 (PCH1) and localizes to the photobody when co-expressed with PCH1. Together, our results support that phyB photobodies include not only phyB and its primary interacting proteins but also its secondary interacting proteins.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeHypocotylLightPhytochrome BArabidopsis ProteinsPhytochromePhytochrome B

Identifiers

PMID36973259
PMCPMC10042835
OpenAlexW4360989492

What OpenQuestion holds

Textfull text, public
LicenceCC BY
measurements read63
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.