Evidence map›Paper›PMID 36972404›Full record

ArticleThe Plant cell2023

Protein S-acylation controls the subcellular localization and biological activity of PHYTOCHROME KINASE SUBSTRATE.

Ana Lopez Vazquez, Laure Allenbach Petrolati, Martina Legris, Christophe Dessimoz, Edwin R Lampugnani, Natasha Glover, Christian Fankhauser

Open access · hybridAbstract read
In one paragraph

Article in The Plant cell, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 7 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Ana Lopez VazquezCentre for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0001-9661-8451
Laure Allenbach PetrolatiCentre for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-9074-5350
Martina LegrisCentre for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0001-6725-2198
Christophe DessimozDepartment of Computational Biology, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0002-2170-853X
Edwin R LampugnaniSchool of BioScience, University of Melbourne, Parkville, Victoria 3010, Australia.ORCID 0000-0002-3666-7240
Natasha GloverDepartment of Computational Biology, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0003-1811-4340
Christian FankhauserCentre for Integrative Genomics, Faculty of Biology and Medicine, University of Lausanne, Génopode Building, CH-1015 Lausanne, Switzerland.ORCID 0000-0003-4719-5901
University of Lausanne · CHSIB Swiss Institute of Bioinformatics · CHUniversity of Tasmania · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PHYTOCHROME KINASE SUBSTRATE (PKS) proteins are involved in light-modulated changes in growth orientation. They act downstream of phytochromes to control hypocotyl gravitropism in the light and act early in phototropin signaling. Despite their importance for plant development, little is known about their molecular mode of action, except that they belong to a protein complex comprising phototropins at the plasma membrane (PM). Identifying evolutionary conservation is one approach to revealing biologically important protein motifs. Here, we show that PKS sequences are restricted to seed plants and that these proteins share 6 motifs (A to F from the N to the C terminus). Motifs A and D are also present in BIG GRAIN, while the remaining 4 are specific to PKSs. We provide evidence that motif C is S-acylated on highly conserved cysteines, which mediates the association of PKS proteins with the PM. Motif C is also required for PKS4-mediated phototropism and light-regulated hypocotyl gravitropism. Finally, our data suggest that the mode of PKS4 association with the PM is important for its biological activity. Our work, therefore, identifies conserved cysteines contributing to PM association of PKS proteins and strongly suggests that this is their site of action to modulate environmentally regulated organ positioning.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeAcylationHypocotylLightPhototropismProtein SArabidopsis ProteinsPhytochromeProtein S

Identifiers

PMID36972404
PMCPMC10291038
OpenAlexW4360993644

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.